View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_12 (Length: 472)
Name: NF15175_low_12
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 9468629 - 9468187
Alignment:
| Q |
13 |
aatattgtgccaatttgtaaactttgttttcctgataaaatgacaagatctcaaatttaggtgtgctgcctattattatagctatgatttctaacttttg |
112 |
Q |
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| T |
9468629 |
aatattgtgccaatttgtaaactttgttttcctgataaaatgacaagatctcaaatttaggtgtgctgcctattattatagctatgatttctaacttttg |
9468530 |
T |
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| Q |
113 |
atacttattgggaactttatagcactatttacaaagtatactagaaaactgaaattagtgacaataatttaggtaggagcgttgtaaaatttgcaactca |
212 |
Q |
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| T |
9468529 |
atatttattgggaactttataacactatttacaaagtatactagaaaactaaaattagtgagaataatttagagaggagcgttggaaaatatgcaactca |
9468430 |
T |
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| Q |
213 |
aattttagatgtcaagtgtctatgaggttcagttaataataaatagttcaaaatgaaagaatctgagtttgaattataactgca-tattcttcggttaga |
311 |
Q |
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| T |
9468429 |
aattttagatgtcaagtgtctataaggttcagttaataataaatagttggaaccgaaagaatctgagtttgaattatgactgtattattcgtcggttaga |
9468330 |
T |
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| Q |
312 |
ctttacttacattttaactcatgatcagctttagataatcgggagtttattctcttgaaaaccacctggtaaagatcaaaaagcaaggnnnnnnnntata |
411 |
Q |
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| T |
9468329 |
ctttacttacattttaactcataatcagctttggattatcgggagtctattctcttgaaaaccacatggtaaagatcaaaaag-aaagaaaaaaaatata |
9468231 |
T |
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| Q |
412 |
atattaattttagaaatatatatttatggatcgatgtccttgat |
455 |
Q |
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| T |
9468230 |
atattaattttagaaatatatatttatggatcgatgtccttgat |
9468187 |
T |
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