View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_15 (Length: 412)
Name: NF15175_low_15
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 21102017 - 21102397
Alignment:
| Q |
16 |
acatcatcctttgcatcaaactcagtttttgcatatcttccaatcgaaacagaaggttttctaactgatcccgaaaccaatgcaccataaaacctcatgt |
115 |
Q |
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| T |
21102017 |
acatcttcctttgcatcaaactcagtttttgcatatcttccaatcgaaacagatggttttccaactgatcccgaaaccaatgaaccataaaacctcatgt |
21102116 |
T |
|
| Q |
116 |
actcatatccagcaataatcctcttctcttgtaatgtgtaagatggtggagggatgccatatgagttgcatatttgagcaagttccacttgaaggttgtg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21102117 |
actcatatccagcaataatcctcttctcttgtaatgtgtaagatggtggagggatgccatatgggttgcatatttgagcaagttccacttgaaggttgtg |
21102216 |
T |
|
| Q |
216 |
atgaatgacaaatttatcaatactagtgtcttcagcaataaatttagcatgagtagtgtcgacatagtaacacaacataagggcaatgagaaatatccat |
315 |
Q |
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||||||||||||||||||| ||||||||| || ||| ||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||| |
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| T |
21102217 |
atgaatgacaaatttatcactactagtgtatttagccataaatttatcatgagtagtgtctacatagtaacacaacataagggcatttagaaatatccat |
21102316 |
T |
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| Q |
316 |
atatacatatatttggaaaaacaatttataaatgaaaaactaaccattaacttcaacaacaagagaggtagaggatgtttg |
396 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21102317 |
atatacatatatttggaaaaacaaattataaatgaaaaactaaccattaacttcaacaacaagagaggtagaggatgtttg |
21102397 |
T |
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