View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15175_low_17 (Length: 390)

Name: NF15175_low_17
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15175_low_17
NF15175_low_17
[»] chr2 (8 HSPs)
chr2 (123-284)||(27645227-27645389)
chr2 (123-195)||(27645499-27645572)
chr2 (123-191)||(27554426-27554495)
chr2 (1-46)||(27645499-27645544)
chr2 (123-190)||(27554734-27554802)
chr2 (123-191)||(27554582-27554651)
chr2 (57-100)||(27645419-27645461)
chr2 (1-42)||(27554454-27554495)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 123 - 284
Target Start/End: Complemental strand, 27645389 - 27645227
Alignment:
Q  123 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaaaatcnnnnnnnnaaaggaatatcttaaggg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||        |||| ||||| |||||||    
T  27645389 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgtatatggtaatttttcattcaataaaaatcttttttttaaagaaatattttaaggg 27645290  T
Q  222 gtaagaattcacacgcaaaaaatatttttggaccaaattttggattaaccacagataaactga 284  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  27645289 gtaagaattcacacgcaaaaaatatttttgaaccgaattttgaattaaccacagataaactga 27645227  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 27645572 - 27645499
Alignment:
Q  123 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaaaatc 195  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||| ||||||||||||||||||||||||||||    
T  27645572 cttttcctcctttgaacaaaatcatacaaaaggtattcgaaatgtatatggtaatttttcatttaatgaaaatc 27645499  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 27554426 - 27554495
Alignment:
Q  123 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaa 191  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||| |||| |||||||||||||||||||    
T  27554426 cttttcctcctttgaacaaaatcatacaaaaggtattccaaatgtatatgttaatttttcatttaatgaa 27554495  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27645544 - 27645499
Alignment:
Q  1 aaaggtattcgaaatgtatatggtagtttttcatttaatgaaaatc 46  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  27645544 aaaggtattcgaaatgtatatggtaatttttcatttaatgaaaatc 27645499  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 27554734 - 27554802
Alignment:
Q  123 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatga 190  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||| |||| |||||||| |||||||||    
T  27554734 cttttcctcctttgaacaaaatcatacaaaaagtattcgtaatgtatatgataattttttatttaatga 27554802  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 27554582 - 27554651
Alignment:
Q  123 cttttcctcctttgaacaaaatcatacgaaaggtattcataat-gttatggtaatttttcatttaatgaa 191  Q
    ||||||||||||| ||||||||||||| ||||||||||  |||   |||| |||||||||||||||||||    
T  27554582 cttttcctcctttaaacaaaatcatacaaaaggtattcgaaataaatatgataatttttcatttaatgaa 27554651  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 27645461 - 27645419
Alignment:
Q  57 actatcattaaataaatatcttaaggagtaaagaattcacacac 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  27645461 actatcattaaataaatatcttaaagagt-aagaattcacacac 27645419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27554454 - 27554495
Alignment:
Q  1 aaaggtattcgaaatgtatatggtagtttttcatttaatgaa 42  Q
    |||||||||| ||||||||||| || ||||||||||||||||    
T  27554454 aaaggtattccaaatgtatatgttaatttttcatttaatgaa 27554495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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