View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15175_low_2 (Length: 682)

Name: NF15175_low_2
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15175_low_2
NF15175_low_2
[»] chr1 (10 HSPs)
chr1 (19-672)||(2487641-2488305)
chr1 (214-276)||(7218113-7218175)
chr1 (228-277)||(15361681-15361730)
chr1 (222-276)||(25006081-25006135)
chr1 (219-277)||(30257651-30257709)
chr1 (203-279)||(9656616-9656693)
chr1 (222-271)||(27887165-27887214)
chr1 (228-277)||(28467360-28467409)
chr1 (219-271)||(17269224-17269276)
chr1 (217-249)||(39348009-39348041)
[»] chr5 (1 HSPs)
chr5 (222-277)||(34205207-34205262)
[»] chr4 (3 HSPs)
chr4 (222-277)||(49219107-49219162)
chr4 (203-277)||(51630079-51630154)
chr4 (223-263)||(11842197-11842237)
[»] chr7 (3 HSPs)
chr7 (229-279)||(49060506-49060556)
chr7 (228-275)||(24909634-24909681)
chr7 (231-275)||(24895326-24895370)
[»] chr3 (5 HSPs)
chr3 (219-277)||(21872315-21872373)
chr3 (223-271)||(24235731-24235779)
chr3 (223-277)||(37689432-37689486)
chr3 (221-271)||(53848109-53848158)
chr3 (358-423)||(49504141-49504206)
[»] chr2 (4 HSPs)
chr2 (219-277)||(43141839-43141897)
chr2 (222-277)||(11513866-11513921)
chr2 (219-277)||(43199382-43199440)
chr2 (226-254)||(20258486-20258514)
[»] chr6 (4 HSPs)
chr6 (221-277)||(4006682-4006738)
chr6 (219-279)||(18264295-18264355)
chr6 (230-291)||(27595622-27595683)
chr6 (219-291)||(2514656-2514728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (222-277)||(27544-27599)
[»] chr8 (3 HSPs)
chr8 (222-291)||(1470903-1470972)
chr8 (220-277)||(34770860-34770917)
chr8 (220-276)||(29973050-29973106)


Alignment Details
Target: chr1 (Bit Score: 615; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 19 - 672
Target Start/End: Original strand, 2487641 - 2488305
Alignment:
Q  19 catcaggcttctggagcagcagcacttttgaaaaggatcatagtgaagctcggtcgcggagaagtgtttcttcgagtggaataacgatgagtatttcttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487641 catcaggcttctggagcagcagcacttttgaaaaggatcatagtgaagctcggtcgcggagaagtgtttcttcgagtggaataacgatgagtatttcttc 2487740  T
Q  119 tgatcttcaaagtagttcgagcagtcaaattagtcctcctgaatctgtcaaccaaggcatgtttatgttatttccattgtttcctattttcaaaattctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487741 tgatcttcaaagtagttcgagcagtcaaattagtcctcctgaatctgtcaaccaaggcatgtttatgttatttccattgtttcctattttcaaaattctg 2487840  T
Q  219 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttatttatcattatagaattaagttgtttatacaaacacggattt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2487841 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttatttgtcattatagaattaagttgtttatacaaacacggattt 2487940  T
Q  319 aaatgattttgatttgacgtctcacactgacaaaagaagtttggtgtatgcagggcttgttcaatggaaccagataagacaacaatgggctggaaataaa 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2487941 aaatgattttgatttgacgtctcacactgacaaaagaagtttggtgtatgcagggcttgttcaatggaaccagataaggcaacaatgggctggaaataaa 2488040  T
Q  419 aggtctgagagtcagacagtagctagagaaccacgaataaggtaaatttcgtatgagataaaggtttttgatgttgctgaaacagcgacgccactgcgat 518  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2488041 aggtctgagagacagacagtagctagagaaccacgaataaggtaaatttcgtatgagataaaggtttttgatgttgctgaaacagcgacgccactgcgat 2488140  T
Q  519 tgagactgcatcagtcgcatttgactgcaattctacgcaatattaataattacattgcat-----------tgttttctatcttatgtttacatcaagta 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||    
T  2488141 tgagactgcatcagtcgcatttgactgcaattctacgcaatattaataattacattgcattgttttgagtatgttttctatcttatgtttacatcaagta 2488240  T
Q  608 attttcgacgtgtttgttaatttcttactgagttcatgttccacacagttctaatgctacctatg 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2488241 attttcgacgtgtttgttaatttcttactgagttcatgttccacacagttctaatgctacctatg 2488305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 7218113 - 7218175
Alignment:
Q  214 ttctgcaggatagtttatgaaaataacttatagcttatatccaaataatttgactttacttta 276  Q
    |||| |||||||| ||||||||| ||||||||||||||||  ||| |||||||||||| ||||    
T  7218113 ttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 7218175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 15361730 - 15361681
Alignment:
Q  228 ttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    ||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  15361730 ttatgaaaacagcttatagcttatatgaaaataatttgactttactttat 15361681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 25006081 - 25006135
Alignment:
Q  222 gatagtttatgaaaataacttatagcttatatccaaataatttgactttacttta 276  Q
    ||||| ||||||||| ||||||||||||||||  ||| |||||||||||| ||||    
T  25006081 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 25006135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 30257709 - 30257651
Alignment:
Q  219 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    |||||||||||||||||| |||||| |||||||||  ||| | |||||||||| |||||    
T  30257709 caggatagtttatgaaaacaacttaaagcttatatggaaacagtttgactttattttat 30257651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 9656693 - 9656616
Alignment:
Q  203 tattttcaaaattc-tgcaggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttattt 279  Q
    |||||||| ||||| | |||||||| ||||||| | | ||||||||||||||  ||||||||| |||||| |||||||    
T  9656693 tattttcataattcatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattttattt 9656616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 27887165 - 27887214
Alignment:
Q  222 gatagtttatgaaaataacttatagcttatatccaaataatttgacttta 271  Q
    ||||||||||||||| ||||||||||||||||  ||||  ||||||||||    
T  27887165 gatagtttatgaaaacaacttatagcttatatggaaattgtttgacttta 27887214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 28467360 - 28467409
Alignment:
Q  228 ttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    ||||||||| ||||| ||||||||||  |||||||||||||||| |||||    
T  28467360 ttatgaaaacaacttgtagcttatatgaaaataatttgactttattttat 28467409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 17269276 - 17269224
Alignment:
Q  219 caggatagtttatgaaaataacttatagcttatatccaaataatttgacttta 271  Q
    |||||||| ||||||||| ||||||| ||||||||  ||| ||||||||||||    
T  17269276 caggatagcttatgaaaacaacttattgcttatatgaaaacaatttgacttta 17269224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 39348009 - 39348041
Alignment:
Q  217 tgcaggatagtttatgaaaataacttatagctt 249  Q
    |||||||||||||||||||| ||||||||||||    
T  39348009 tgcaggatagtttatgaaaacaacttatagctt 39348041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 34205262 - 34205207
Alignment:
Q  222 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    ||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  34205262 gatagcttatgaaaacaacttatagcttatataaaaataatttgactttactttat 34205207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 49219162 - 49219107
Alignment:
Q  222 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||    
T  49219162 gatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttat 49219107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 51630154 - 51630079
Alignment:
Q  203 tattttca-aaattctgcaggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    |||||||| ||||||| || ||||| ||||||||||| ||||||||||||||| ||| ||||| |||||| |||||    
T  51630154 tattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaactttattttat 51630079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 11842237 - 11842197
Alignment:
Q  223 atagtttatgaaaataacttatagcttatatccaaataatt 263  Q
    |||||||||||||| ||||||||||||||||  ||||||||    
T  11842237 atagtttatgaaaacaacttatagcttatatgaaaataatt 11842197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 49060556 - 49060506
Alignment:
Q  229 tatgaaaataacttatagcttatatccaaataatttgactttactttattt 279  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  49060556 tatgaaaataacttatagcttatataaaaataatttgactttattttattt 49060506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 24909681 - 24909634
Alignment:
Q  228 ttatgaaaataacttatagcttatatccaaataatttgactttacttt 275  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24909681 ttatgaaaacaacttatagcttatatgaaaataatttgactttacttt 24909634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 24895370 - 24895326
Alignment:
Q  231 tgaaaataacttatagcttatatccaaataatttgactttacttt 275  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||    
T  24895370 tgaaaacaacttatagcttatatgaaaataatttgactttacttt 24895326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 21872315 - 21872373
Alignment:
Q  219 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    |||||||| ||||||||| ||||||||||||||||| ||| |||||||| ||| |||||    
T  21872315 caggatagcttatgaaaacaacttatagcttatatcaaaaaaatttgaccttattttat 21872373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 24235731 - 24235779
Alignment:
Q  223 atagtttatgaaaataacttatagcttatatccaaataatttgacttta 271  Q
    |||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgacttta 24235779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 37689432 - 37689486
Alignment:
Q  223 atagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    |||| |||||||||||  |||||||||||||  ||||||||| ||||||||||||    
T  37689432 atagcttatgaaaatagtttatagcttatatgaaaataatttaactttactttat 37689486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 53848109 - 53848158
Alignment:
Q  221 ggatagtttatgaaaataacttatagcttatatccaaataatttgacttta 271  Q
    |||||||||||||||||||| | ||||||||||| ||| ||||||||||||    
T  53848109 ggatagtttatgaaaataac-tgtagcttatatcaaaacaatttgacttta 53848158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 49504206 - 49504141
Alignment:
Q  358 tttggtgtatgcagggcttgttcaatggaaccagataagacaacaatgggctggaaataaaaggtc 423  Q
    |||| |||||||||| ||| |||  |||||||| | ||| |||||||||| |||||||||||||||    
T  49504206 tttgatgtatgcaggtcttcttctgtggaaccaaacaaggcaacaatgggttggaaataaaaggtc 49504141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 43141897 - 43141839
Alignment:
Q  219 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    |||||||| ||||||||| | ||||||||||||||  ||| ||||||||||||||||||    
T  43141897 caggatagcttatgaaaacatcttatagcttatatggaaacaatttgactttactttat 43141839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 11513921 - 11513866
Alignment:
Q  222 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    ||||| ||||||||| ||||||||||||||||  ||| |||||||||||| |||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttat 11513866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 43199440 - 43199382
Alignment:
Q  219 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    |||||||||||||||||| |||||||||||||||   | ||||||| |||||| |||||    
T  43199440 caggatagtttatgaaaacaacttatagcttatacgaagataatttaactttattttat 43199382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 20258514 - 20258486
Alignment:
Q  226 gtttatgaaaataacttatagcttatatc 254  Q
    |||||||||||||||||||||||||||||    
T  20258514 gtttatgaaaataacttatagcttatatc 20258486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 4006738 - 4006682
Alignment:
Q  221 ggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    |||||| ||||||||| ||||||||||||||||  ||| |||||||||||| |||||    
T  4006738 ggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttat 4006682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 18264355 - 18264295
Alignment:
Q  219 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttattt 279  Q
    |||||||||||| ||||||| |||||| ||| |||  ||| ||||||||||||||||||||    
T  18264355 caggatagtttaagaaaatagcttataacttgtatgaaaacaatttgactttactttattt 18264295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 27595622 - 27595683
Alignment:
Q  230 atgaaaataacttatagcttatatccaaataatttgactttactttatttatcattatagaa 291  Q
    |||||| ||||||| |||||||||  |||||||||||||||| ||||| | | |||||||||    
T  27595622 atgaaattaacttacagcttatatgaaaataatttgactttattttatcttttattatagaa 27595683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 2514728 - 2514656
Alignment:
Q  219 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttatttatcattatagaa 291  Q
    ||||| || ||||||||||||||||||||| ||||  || || |||||||||| ||||| | | |||||||||    
T  2514728 caggacagcttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaa 2514656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 27599 - 27544
Alignment:
Q  222 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    ||||||||||||||| ||||||||| ||||||  ||| |||||||||||| |||||    
T  27599 gatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttat 27544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 1470903 - 1470972
Alignment:
Q  222 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttatttatcattatagaa 291  Q
    ||||| ||||||||| | ||||||||||||||  || ||||||||||||| ||||| | | |||||||||    
T  1470903 gataggttatgaaaacagcttatagcttatatgaaagtaatttgactttattttatcttttattatagaa 1470972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 34770917 - 34770860
Alignment:
Q  220 aggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 277  Q
    ||||||| ||||||||| ||||||||||||| ||  ||| |||||||||||| |||||    
T  34770917 aggatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttat 34770860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 29973106 - 29973050
Alignment:
Q  220 aggatagtttatgaaaataacttatagcttatatccaaataatttgactttacttta 276  Q
    ||||||| ||||||||| |||||||||||||| |  ||||| |||||||||| ||||    
T  29973106 aggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttatttta 29973050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University