View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_23 (Length: 303)
Name: NF15175_low_23
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 52887955 - 52887854
Alignment:
| Q |
19 |
acagggcattgcaaagtggcagagagtaaagaaaggaaattggagttgcccgaggagaaaggaaagtacagtgaagaaaggagggtggccaatgaattga |
118 |
Q |
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| T |
52887955 |
acagggcattgcaaagtggcagagagtaaagaaaggaaattggagttgcccgaggagaaaggaaagtacagtgaagaaaggagggtggccaatgaattga |
52887856 |
T |
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| Q |
119 |
ag |
120 |
Q |
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|| |
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| T |
52887855 |
ag |
52887854 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 52887791 - 52887719
Alignment:
| Q |
196 |
ggtcacgggagaaggaagataaaaggaaaaggtccgttgagagagtgtgtagatataggcaagactgacatat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52887791 |
ggtcacgggagaaggaagataaaaggaaaaggtccgttgagagagtgtgtagatataggcaagactgacatat |
52887719 |
T |
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