View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_24 (Length: 295)
Name: NF15175_low_24
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 7873160 - 7873452
Alignment:
| Q |
1 |
tcaccgtcaatccaaacatgtactaagatatatggcaaattatcatataaatataatagnnnnnnnnnn------attgtatgttgagtaataatataaa |
94 |
Q |
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| T |
7873160 |
tcaccgtcaatccaaacatgtactaagttatatggcaaattatcatataaatataatagtttttttttattttttattgtatgttgagtaataatataaa |
7873259 |
T |
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| Q |
95 |
aatatattgcagaatatcatataatatttctattttcaatgatgtttgttgaaagttgacctcttctcacttctcaatttaggtgatgaaaattactttt |
194 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7873260 |
aatatattgcagaatatcatataatatttctactttcaatgatgtttgttgaaagttgacctcttctcacttctcaatttaggtgatgaaaattactttt |
7873359 |
T |
|
| Q |
195 |
gttttactctattgaccagagtattccaaaataaatttgtctttctctggtagattttgttctttcattacagttaaggattcatgaatctgt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7873360 |
gttttactctattgaccagagtattccaaaataaatttgtccttctctagtagattttgttctttcattacagttaaggattcatgaatctgt |
7873452 |
T |
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