View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_3 (Length: 627)
Name: NF15175_low_3
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 310 - 548
Target Start/End: Original strand, 44257910 - 44258141
Alignment:
| Q |
310 |
gttcagaaagcacctgtagtctgtttcttcaagctaaatcatgaattatcacaagtccaaaaactcatcatgaacttttgtcagaagagacaggtgatca |
409 |
Q |
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| T |
44257910 |
gttcagaaagcacttgtagtctgtttcttcaagctaaatcatgaattatcacaagtccaaaaactcatcatgaacttatgccagaagagacagg---tca |
44258006 |
T |
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| Q |
410 |
gcatcaaggaaataagataaagatgcagcagagcacacatcaata-----ttctcacataaaaccaaatcaagcaaaagaatgcactacataaatggtca |
504 |
Q |
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| T |
44258007 |
gcatcaaggaaataagataaagatgcagcggagcacacatcaatataatgtgctcacataaaaccaaat---------gaaagcactacataaatggtca |
44258097 |
T |
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| Q |
505 |
tcataattggaacttcggtctagacgaacaggaaaaatggttgc |
548 |
Q |
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| T |
44258098 |
tcataattggaactttggtctagccgaacaggaaaaatagttgc |
44258141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 48 - 280
Target Start/End: Original strand, 44257675 - 44257914
Alignment:
| Q |
48 |
ctatgatttaatgtctactcgaccaaaaataaaatatataacaacattgtgctatagtatagcggatttcc-----atgcatctacattgacaatatctt |
142 |
Q |
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| T |
44257675 |
ctatgatttaatgtctactcgaccaaaaataaaatatatagca---ttgtgctatagtatagcggatttccattccatgcatctacattgacaatatctt |
44257771 |
T |
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| Q |
143 |
gttattcgtgtcgagtactcttggcagtatctgcacaatgcaataactagcttgttcaaatttggggtag-----taaacatgcaataaggcacatata- |
236 |
Q |
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| T |
44257772 |
attattcgtgtcgagtactcttggcagtatctgcagaatgcaacaa----cttgttcaaatttggggtagtaaactaaacatgcaataaggcacatatat |
44257867 |
T |
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| Q |
237 |
---cttaacagcatgattagacacaaatcaatcagatacacggttca |
280 |
Q |
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| T |
44257868 |
atccttgctagcatgataagacacaaatcaatcagatacatggttca |
44257914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 308 - 527
Target Start/End: Original strand, 44260289 - 44260504
Alignment:
| Q |
308 |
ttgttcagaaagcacctgtagtctgtttcttcaagctaaatcatgaattatcacaagtccaaaaactcatcatgaacttttgtcagaagagacaggtgat |
407 |
Q |
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| T |
44260289 |
ttgttcagaaagcacctgtagtctgtttcttcaggctaaatcatgaaatatcacaagttcaataacacaccatgtatttatgtcagaaaagataggt--- |
44260385 |
T |
|
| Q |
408 |
cagcatcaaggaaataagataaagatgcagcagagcacacatcaatattctcacataaaaccaaatcaagcaaaagaatgcactacataaatggtcatca |
507 |
Q |
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| T |
44260386 |
cagcatcaaggaactaagaaaaagatgcagcagagcgcacatcaatgttttcacataaaaccaaatcaagcagatgaatgcacaacataaatggcgat-a |
44260484 |
T |
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| Q |
508 |
taattggaacttcggtctag |
527 |
Q |
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|||| ||||||| ||||||| |
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| T |
44260485 |
taatcggaactttggtctag |
44260504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 550 - 617
Target Start/End: Original strand, 44258206 - 44258273
Alignment:
| Q |
550 |
tattcagctgcagtacacttaaatatgacattttttcaagatagttttttccttccttttgtcctttg |
617 |
Q |
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| T |
44258206 |
tattcagctgcagtacacttaaatatgacattttttcaagatagttttttccttctttttgtcctttg |
44258273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 446 - 527
Target Start/End: Original strand, 44280197 - 44280278
Alignment:
| Q |
446 |
acatcaatattctcacataaaaccaaatcaagcaaaagaatgcactacataaatggtcatcataattggaacttcggtctag |
527 |
Q |
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| T |
44280197 |
acatcaatgttttcacataaaaccaaatcaagcagaagaatgcacaacataaatggccatcatagttggaactttggtctag |
44280278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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