View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15175_low_31 (Length: 267)
Name: NF15175_low_31
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 7132237 - 7132351
Alignment:
| Q |
17 |
atttttgattcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatgaaagctatatact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7132237 |
atttttgattcattaacatgtgttcttagggtatttgttagcattgtcgtatttaaattggttttgaagttgtaaaattgatatatgaaagctatatact |
7132336 |
T |
|
| Q |
117 |
tttaagttacgaaaa |
131 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7132337 |
tttaagttacgaaaa |
7132351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 7132359 - 7132444
Alignment:
| Q |
177 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgctact |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7132359 |
acattttgtatcaagaacttatttttcttataataacgttttggaacagccaacaagtaacatttgtgtttccttcctttgttact |
7132444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University