View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_34 (Length: 263)
Name: NF15175_low_34
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 42113764 - 42113511
Alignment:
| Q |
10 |
ataattctacttctaatagtgttatgttttgtttaagtaaggttaagatttgctaagatattattatcaatcaatgcagggcaacttctgctacaactca |
109 |
Q |
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| T |
42113764 |
ataattctacttctaatagtgttatgttttgtttaagtaaggttaagatttgctaagatattattatcaatcaatgcagggcaacttctgctacaactca |
42113665 |
T |
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| Q |
110 |
tgttgttttaggacagtttaagacctgtgttattctattgggaggctatcttttattcgattcagatcccgggattgtgagcattggcggagcggttgtt |
209 |
Q |
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| T |
42113664 |
tgttgttttaggacagtttaagacctgtgttattctattgggaggctatcttttattcgattcagatcccgggattgtgagcattggcggagcggttgtt |
42113565 |
T |
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| Q |
210 |
gctctcactggaatgtcggtttacacaacatttaacttgcaagagtctcaagaa |
263 |
Q |
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| T |
42113564 |
gctcttactggaatgtcggtttacacaacatttaacttgcaagagtctcaagaa |
42113511 |
T |
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