View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_36 (Length: 252)
Name: NF15175_low_36
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 46491594 - 46491384
Alignment:
| Q |
13 |
cacagagtgaagaccgaagagagctatgcagtagtagtgtggcattaaatgttcgtgtgcccaaccagatttaatgtttaccactatattccttctgatt |
112 |
Q |
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| T |
46491594 |
cacaaagtgaagaccgaagagagctatgcagtagtagtgtggcattaaatgttcgtgtgcccaaccagatttaatgtttaccactatattccttctgatt |
46491495 |
T |
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| Q |
113 |
ctatatatatccttccaattaccttggcaggtgttagatatcatgagttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtat |
212 |
Q |
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| T |
46491494 |
ctatatatatccttccaattaccttggcaggtgttagatatcatgagttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtat |
46491395 |
T |
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| Q |
213 |
gaactcttcgg |
223 |
Q |
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|||||| |||| |
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| T |
46491394 |
gaactcatcgg |
46491384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 46498760 - 46498700
Alignment:
| Q |
160 |
ttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactctt |
220 |
Q |
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||||||||||||||| ||||||||| ||||| ||||||| |||||||| ||||||||||| |
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| T |
46498760 |
ttgttaaagaaattagaggaagtctgtcaaaaattattaacatacacaattatgaactctt |
46498700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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