View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_38 (Length: 248)
Name: NF15175_low_38
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_38 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: scaffold0591 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 6328 - 6552
Alignment:
| Q |
15 |
ttgtttataaaatagttgctccaatattgcaacatgaannnnnnngctagataagccttacaat--tgagactttttcaatctcaacagccagtttcttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||| |
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| T |
6328 |
ttgtttataaaatagttgctccaatattgcaacatgaatttttttgctagataagccttccaatattgagactttttcaatctcaagagccagtttcttc |
6427 |
T |
|
| Q |
113 |
atttattaggaaagtaattgaatacataatttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattc |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6428 |
atttattaggaaagtatttgaatacataatttctcgtttctatttttccattcttaggtctgagtttaataatgcaattcgagaagggggtgtcccattc |
6527 |
T |
|
| Q |
213 |
aacatggttcatggcacacatgcct |
237 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
6528 |
aacatggttcatggcacacatgcct |
6552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 28643449 - 28643231
Alignment:
| Q |
15 |
ttgtttataaaatagttgctccaatattgcaacatgaannnnnnngctagataagccttacaattgagactttttcaatctcaacagccagtttcttcat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28643449 |
ttgtttataaaatagttgctccaatattgcaacatgattttttttgctagataagccttccaattgagactttttcaatctcaacagccagtttcttcat |
28643350 |
T |
|
| Q |
115 |
ttattaggaaagtaattgaatacataatttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaa |
214 |
Q |
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| T |
28643349 |
ttattaggaaagtaattgaatacataatttctcgtttctatttt----ttcataggtctgagcttaataatgcaattcgagaagggggtgtcccattcaa |
28643254 |
T |
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| Q |
215 |
catggttcatggcacacatgcct |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
28643253 |
catggttcatggcacacatgcct |
28643231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 28652401 - 28652183
Alignment:
| Q |
15 |
ttgtttataaaatagttgctccaatattgcaacatgaannnnnnngctagataagccttacaattgagactttttcaatctcaacagccagtttcttcat |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28652401 |
ttgtttataaaatagttgctccaatattgcaacatgattttttttgctagataagccttccaattgagactttttcaatctcaacagccagtttcttcat |
28652302 |
T |
|
| Q |
115 |
ttattaggaaagtaattgaatacataatttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaa |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28652301 |
ttattaggaaagtaattgaatacataatttctcgtttctatttt----ttcataggtctgagcttaataatgcaattcgagaagggggtgtcccattcaa |
28652206 |
T |
|
| Q |
215 |
catggttcatggcacacatgcct |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
28652205 |
catggttcatggcacacatgcct |
28652183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 28699715 - 28699502
Alignment:
| Q |
15 |
ttgtttataaaatagttgctccaatattgcaacatgaannnnnnn-gctagataagccttacaattgagactttttcaatctcaacagccagtttcttca |
113 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |
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| T |
28699715 |
ttgtttataaaattgttgctccaacattgcaacatgaattttgtttgctagataagccttccaatagagaccttttcaatctcaacagccagtttcttca |
28699616 |
T |
|
| Q |
114 |
tttattaggaaagtaattgaatacataatttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattca |
213 |
Q |
| |
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|||||||||| ||||||| ||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
28699615 |
tttattaggatagtaattaaatacataatt----gtttctt------cattcttaggtctgaccttaagaatgcaattcgagaagggggtgtcccattca |
28699526 |
T |
|
| Q |
214 |
acatggttcatggcacacatgcct |
237 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
28699525 |
acatggttcatggcacacatgcct |
28699502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 28725406 - 28725311
Alignment:
| Q |
142 |
tttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcct |
237 |
Q |
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|||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
28725406 |
tttctcgtttctattttttcattcttaggtcccagctcaataatgcaattcgagaagggggtattccattcaacatggttcatggcacacatgcct |
28725311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 28710632 - 28710537
Alignment:
| Q |
142 |
tttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcct |
237 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28710632 |
tttctcgtttctgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccattcaacactgttcatggcacacatgcct |
28710537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 28717979 - 28717884
Alignment:
| Q |
142 |
tttctcgtttctatttttccattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcct |
237 |
Q |
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|
|||||||||||| ||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28717979 |
tttctcgtttctgttttttcattcttaggcctgagcttaagaatacaattcgagaagggggtgtcccattcaacactgttcatggcacacatgcct |
28717884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 28625633 - 28625557
Alignment:
| Q |
161 |
cattcttaggtctgagcttaataatgcaattcgagaagggggtgtcccattcaacatggttcatggcacacatgcct |
237 |
Q |
| |
|
|||||||| ||| | |||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
28625633 |
cattcttaagtccgggcttaagaatgcaattcgaaaaggcggtgtcccattcaacattgttcatggcacacatgcct |
28625557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 28739354 - 28739312
Alignment:
| Q |
161 |
cattcttaggtctgagcttaataatgcaattcgagaagggggt |
203 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
28739354 |
catttttaggtccgagcttaataatgcaattcgagaagggggt |
28739312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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