View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15175_low_40 (Length: 248)
Name: NF15175_low_40
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_40 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2760678 - 2760914
Alignment:
| Q |
1 |
cttttcgcattacaccgtaactatgaagaaaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2760678 |
cttttcgcattacaccgtaactatgaagaaaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctac |
2760777 |
T |
|
| Q |
101 |
aaaagctttattatgtggaggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2760778 |
aaaagctttattatgtggaggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaag |
2760877 |
T |
|
| Q |
201 |
aagagagcatggggaggccataagtgctgttatagta |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2760878 |
aagagagcatggggaggccataagtgctgttatagta |
2760914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 2820030 - 2820260
Alignment:
| Q |
7 |
gcattacaccgtaactatgaagaaaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagc |
106 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | || || | |
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| T |
2820030 |
gcattacatcgtaactatgaagaaaattattctctgttgggctttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttcattgcagaaac |
2820129 |
T |
|
| Q |
107 |
tttattatgtggaggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagaga |
206 |
Q |
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| T |
2820130 |
tttattatgtggatgtaaaacataggggagtcgatctcattaacgagatgaaaatgttaaagcagttaaggaggttaggtttaaggcatgtaagaagaga |
2820229 |
T |
|
| Q |
207 |
gcatggggaggccataagtgctgttatagta |
237 |
Q |
| |
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|||||||| ||| ||||||||||||||||| |
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| T |
2820230 |
acatggggatgccttaagtgctgttatagta |
2820260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 2854458 - 2854259
Alignment:
| Q |
30 |
aaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatgtggaggtaaatcat |
129 |
Q |
| |
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||||||||| || || ||||||||| | |||||| | || ||||||||||||||||| || ||||||| ||||| || |||||||||||||| ||||| |
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| T |
2854458 |
aaagtattctcttttgggatttacaaccggtgtgttggtgaaaaaaggtattaaaaacttgacttcccttcaaaacctatattatgtggaggtcgatcat |
2854359 |
T |
|
| Q |
130 |
gggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagagagcatggggaggccataagtgctg |
229 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2854358 |
gggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctg |
2854259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 2808743 - 2808943
Alignment:
| Q |
13 |
caccgtaactatgaagaaaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttatt |
112 |
Q |
| |
|
||||||||||| |||||||||||||| || || || |||||| | |||||| |||||||||||||||||||| || ||||||| ||||| ||||||| |
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| T |
2808743 |
caccgtaactacgaagaaaagtattctcttttaggctttacaacgggtgtgttcgtggaaaaaggtattaaaaacttgacttcccttcaaaacctttatt |
2808842 |
T |
|
| Q |
113 |
atgtggaggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagagagcatgg |
212 |
Q |
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|
||||||||||| |||||||||| || ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
2808843 |
atgtggaggtagatcatgggggggtagatctcattcaagagatgaaaatgttagggcagttaaggaggttaggtttaaggcatgtgagaagagaacatgg |
2808942 |
T |
|
| Q |
213 |
g |
213 |
Q |
| |
|
| |
|
|
| T |
2808943 |
g |
2808943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 70 - 229
Target Start/End: Original strand, 2750528 - 2750687
Alignment:
| Q |
70 |
gaaaaaggtattaaaaacatggcttccctacaaaagctttattatgtggaggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtc |
169 |
Q |
| |
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||||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| | |
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| T |
2750528 |
gaaaaaggtattaaaaacatgatttccctaaaaaacctttattatgtggaggtagatcatgggggagtagatctcattgaagagatgaaaatgctaaggc |
2750627 |
T |
|
| Q |
170 |
agttaagaaggttaggtttaaggcatgtaagaagagagcatggggaggccataagtgctg |
229 |
Q |
| |
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||||||| | ||||||||||| |||||||||||| || |||||| | ||||||||||||| |
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|
| T |
2750628 |
agttaaggaagttaggtttaaagcatgtaagaagggaacatgggaatgccataagtgctg |
2750687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 2770579 - 2770736
Alignment:
| Q |
56 |
ctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatgtggaggtaaatcatgggggagttgatctcattcaagagat |
155 |
Q |
| |
|
|||||| || |||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||| || |||||||||||||||| |
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| T |
2770579 |
ctggtgggaggatgcaaaaaggtattaaaaacatgacttccctacaaaatctttatgatgtggaggtagatcatgggggcgtatatctcattcaagagat |
2770678 |
T |
|
| Q |
156 |
gaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagagagcatggg |
213 |
Q |
| |
|
||||||| |||| |||||||| |||||||| ||||||| |||||| |||| |||||| |
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|
| T |
2770679 |
gaaaatgctaaggcagttaaggaggttaggcttaaggcgagtaagacgagaacatggg |
2770736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 2798840 - 2799037
Alignment:
| Q |
16 |
cgtaactatgaagaaaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatg |
115 |
Q |
| |
|
||||||||||||| ||||||| || || || |||||| |||||||| |||||||||||||||||||||| || |||||||||||| |||||||||| |
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|
| T |
2798840 |
cgtaactatgaagcggagtattctcttttgggctttacaactggtgtgttgatggaaaaaggtattaaaaacttgatttccctacaaaatctttattatg |
2798939 |
T |
|
| Q |
116 |
tggaggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagagagcatggg |
213 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||| ||||||||| |||| | ||||| || | ||||||||||||||| ||| |||| |||||| |
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|
| T |
2798940 |
tggaggtagatcatggaggggttgatctcattcaagaaatgaaaatgctaaggaatttaaggagttcaggtttaaggcatgtcagaggagaacatggg |
2799037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 2837262 - 2837051
Alignment:
| Q |
16 |
cgtaactatgaagaaaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatg |
115 |
Q |
| |
|
||||||||||| | ||||||||| | || || |||||| |||||||| ||||| ||||||||||||||| || ||||||| ||||| |||| ||||| |
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|
| T |
2837262 |
cgtaactatgatgcaaagtattctgttttgggctttacaactggtgtgcggatggttaaaggtattaaaaacttgacttcccttcaaaaactttgttatg |
2837163 |
T |
|
| Q |
116 |
tggaggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagagagcatgggga |
215 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||| |||||||| |||||||||| || ||| | | |||||||||||||||||||| |||||| |||||| | |
|
|
| T |
2837162 |
tggaggtagatcatgggggagtagatcttattgaagagatggaaatgttaaggcaattatggaagttaggtttaaggcatgtaaaaagagaacatgggaa |
2837063 |
T |
|
| Q |
216 |
ggccataagtgc |
227 |
Q |
| |
|
||| ||||||| |
|
|
| T |
2837062 |
tgccttaagtgc |
2837051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 5414404 - 5414574
Alignment:
| Q |
56 |
ctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatgtggaggtaaatcatgggggagttgatctcattcaagagat |
155 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| ||||||| |
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|
| T |
5414404 |
ctggtgtgctgatggaaaaaggtattaaaaacatgacttccctacaaaatttttattatgtgcaggtagatcatgggggagtggatctcattgaagagat |
5414503 |
T |
|
| Q |
156 |
gaaaatg-ttaagtcagttaagaaggttaggtttaaggcatgtaagaagagagcatggggaggccataagtg |
226 |
Q |
| |
|
||| ||| ||||| |||||||| | ||| ||||||| ||||||||||||||| || ||| | |||||||||| |
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|
| T |
5414504 |
gaagatgcttaag-cagttaaggaagttgggtttaaagcatgtaagaagagaacacgggaatgccataagtg |
5414574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 2791828 - 2791990
Alignment:
| Q |
51 |
tacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatgtggaggtaaatcatgggggagttgatctcattcaa |
150 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||||| | || ||||||| ||||| |||||| | ||||||||| ||||||||||||| |||||||||||| |
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|
| T |
2791828 |
tacaactggtgtgaggatgcaaaaaggtattaaaatcttgacttcccttcaaaacctttatcacgtggaggtagatcatgggggagtagatctcattcaa |
2791927 |
T |
|
| Q |
151 |
gagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagagagcatggg |
213 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||| ||||| || |||||| |||| |||||| |
|
|
| T |
2791928 |
gagatgaaaatgctaaggcagttaaggaggttaggcttaagtcaagtaagacgagaacatggg |
2791990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 4811 - 4621
Alignment:
| Q |
16 |
cgtaactatgaagaaaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatg |
115 |
Q |
| |
|
|||||||||||||| || ||||| | || || |||||| |||||||| |||||||||||||||||||||| || ||||||||||||| ||| ||||| |
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|
| T |
4811 |
cgtaactatgaagataaatattctattttaggctttacaactggtgtgctgatggaaaaaggtattaaaaacttgacttccctacaaaatatttgttatg |
4712 |
T |
|
| Q |
116 |
tggaggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagaga |
206 |
Q |
| |
|
| ||| || ||||||||||||| ||||||||| ||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||| |
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|
| T |
4711 |
tcgagctagatcatgggggagtagatctcattgaagagatgaaaatactaaggcagttaaggaagttaggtttaaggcatgtaagaagaga |
4621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 11116407 - 11116221
Alignment:
| Q |
20 |
actatgaagaaaagtattcactgtttggatttacatctggtgtgaagatggaaaaaggtattaaaaacatggcttccctacaaaagctttattatgtgga |
119 |
Q |
| |
|
||||||||||||| ||||| | || || |||| | |||||||| ||||||||||||||||||||| || ||||||| ||||| | | ||||||||| |
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|
| T |
11116407 |
actatgaagaaaaatattctgttttgggctttataactggtgtgcttatggaaaaaggtattaaaaacttgacttcccttcaaaatatgtgttatgtgga |
11116308 |
T |
|
| Q |
120 |
ggtaaatcatgggggagttgatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagaga |
206 |
Q |
| |
|
|||| ||||||||||||| ||||| || ||||||||||||||||||| |||||||||| |||||||||||||| ||| | |||||| |
|
|
| T |
11116307 |
ggtagatcatgggggagtagatcttatagaagagatgaaaatgttaaggcagttaagaaagttaggtttaaggcgtgtgaaaagaga |
11116221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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