View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_46 (Length: 220)
Name: NF15175_low_46
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 45673530 - 45673714
Alignment:
| Q |
17 |
cactttattcattccttataattcctactaataattaaatcacctttcctgcaatccaatccttcttaaactttgatttatgcccaaattaacctttata |
116 |
Q |
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| T |
45673530 |
cactttattcattccttataattcctactaataattaaatcacctttcctgcaatccaatccttcttaaagtttgatttatgcccaaattaacctttata |
45673629 |
T |
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| Q |
117 |
aaatcatttaggatgaatattgtctcccatttataatt-tttaaatgtgtttggattggatgtgagattcttaaatattagacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45673630 |
aaatcatttaggatgaatattgtctcccatttataattataaaaatgtgtttggattggatgtgagattcttaaatattagacat |
45673714 |
T |
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