View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_48 (Length: 214)
Name: NF15175_low_48
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 51866703 - 51866503
Alignment:
| Q |
1 |
gcttcctgctttttattatctatcatggtcattaccaaaaatatactttgtattcaaaaggtgtcattcatctgaatttattatttttgtgttggtttgc |
100 |
Q |
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| T |
51866703 |
gcttcctgctttttattatctatcatggtcattaccaaaaatatactttgtattcaaaaggtgtcc--catctgaatttattattattgtgttggtttac |
51866606 |
T |
|
| Q |
101 |
atgtcaccaccccctcatctcacaatctgctatgtcttaatttaggacaaatttatgacaaaatcctgaatttattattatcatattaaaatatgccatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
51866605 |
ctgtcaccaccccctcatctcacaatctgctatgtcttaatttatgacaaatttatgacaaaatcctgaatttatcattatcatattaaaatgtgccatg |
51866506 |
T |
|
| Q |
201 |
atg |
203 |
Q |
| |
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||| |
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| T |
51866505 |
atg |
51866503 |
T |
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