View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15175_low_51 (Length: 206)

Name: NF15175_low_51
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15175_low_51
NF15175_low_51
[»] chr7 (19 HSPs)
chr7 (17-187)||(32944683-32944853)
chr7 (17-86)||(11509606-11509675)
chr7 (17-87)||(18148594-18148664)
chr7 (17-86)||(11509561-11509630)
chr7 (22-86)||(22530012-22530076)
chr7 (16-84)||(34706124-34706191)
chr7 (37-87)||(34706054-34706104)
chr7 (25-87)||(34706087-34706150)
chr7 (22-87)||(18148566-18148629)
chr7 (23-65)||(22529988-22530030)
chr7 (22-106)||(22529931-22530016)
chr7 (22-65)||(34706174-34706217)
chr7 (17-79)||(3386523-3386585)
chr7 (17-59)||(18148549-18148591)
chr7 (17-59)||(34706049-34706091)
chr7 (22-67)||(11509889-11509934)
chr7 (22-86)||(11391800-11391864)
chr7 (22-86)||(22529997-22530061)
chr7 (35-86)||(34706021-34706073)
[»] chr3 (20 HSPs)
chr3 (17-86)||(52466270-52466339)
chr3 (17-86)||(3472720-3472789)
chr3 (17-170)||(52466141-52466294)
chr3 (23-170)||(3476002-3476150)
chr3 (17-87)||(39728065-39728136)
chr3 (17-65)||(3586241-3586289)
chr3 (93-170)||(17737339-17737415)
chr3 (23-86)||(15778165-15778229)
chr3 (17-76)||(3475966-3476025)
chr3 (20-71)||(18694494-18694545)
chr3 (20-71)||(18710013-18710064)
chr3 (37-86)||(3475971-3476020)
chr3 (22-87)||(18539049-18539114)
chr3 (22-86)||(5842095-5842159)
chr3 (36-86)||(3262953-3263004)
chr3 (23-86)||(15778120-15778183)
chr3 (17-76)||(18539090-18539149)
chr3 (22-57)||(18706231-18706266)
chr3 (22-72)||(3472704-3472754)
chr3 (17-66)||(18539025-18539074)
[»] chr1 (23 HSPs)
chr1 (22-170)||(52273005-52273154)
chr1 (17-86)||(23633054-23633123)
chr1 (20-87)||(90239-90306)
chr1 (17-87)||(12785272-12785343)
chr1 (17-86)||(9132290-9132359)
chr1 (17-86)||(9132335-9132404)
chr1 (17-86)||(41137858-41137927)
chr1 (104-159)||(23632958-23633013)
chr1 (28-86)||(9132380-9132438)
chr1 (25-86)||(23633099-23633161)
chr1 (17-107)||(23632984-23633078)
chr1 (85-158)||(23633441-23633514)
chr1 (22-86)||(90271-90335)
chr1 (17-137)||(41137775-41137882)
chr1 (17-66)||(9132265-9132314)
chr1 (33-86)||(23633145-23633198)
chr1 (22-86)||(52272930-52272994)
chr1 (20-76)||(52272973-52273029)
chr1 (22-65)||(18514680-18514723)
chr1 (36-83)||(23633178-23633225)
chr1 (22-59)||(23633187-23633224)
chr1 (16-76)||(23633140-23633200)
chr1 (22-66)||(52272990-52273034)
[»] chr4 (21 HSPs)
chr4 (17-87)||(11150598-11150668)
chr4 (28-86)||(15703750-15703808)
chr4 (17-87)||(42597243-42597313)
chr4 (17-86)||(23973118-23973187)
chr4 (28-81)||(25127107-25127160)
chr4 (17-76)||(15703784-15703843)
chr4 (97-170)||(35462293-35462366)
chr4 (22-167)||(15242011-15242160)
chr4 (22-86)||(37838560-37838624)
chr4 (22-86)||(42597289-42597353)
chr4 (17-76)||(19612737-19612796)
chr4 (24-86)||(19612772-19612835)
chr4 (37-142)||(13885253-13885361)
chr4 (17-169)||(14644896-14645047)
chr4 (17-86)||(15703814-15703883)
chr4 (17-65)||(9564917-9564965)
chr4 (17-72)||(13885308-13885366)
chr4 (22-86)||(15703774-15703838)
chr4 (36-86)||(23973091-23973142)
chr4 (22-64)||(18875383-18875425)
chr4 (17-86)||(18875348-18875417)
[»] chr8 (11 HSPs)
chr8 (22-107)||(42145628-42145713)
chr8 (17-81)||(9882567-9882631)
chr8 (21-86)||(12577132-12577197)
chr8 (17-86)||(9882521-9882591)
chr8 (17-80)||(40387802-40387865)
chr8 (22-170)||(42145598-42145750)
chr8 (17-76)||(17289899-17289958)
chr8 (25-82)||(40387764-40387822)
chr8 (17-65)||(12577173-12577221)
chr8 (24-86)||(12577090-12577152)
chr8 (36-84)||(12577072-12577120)
[»] chr2 (12 HSPs)
chr2 (17-87)||(37379722-37379792)
chr2 (17-86)||(20264547-20264614)
chr2 (17-86)||(16092602-16092671)
chr2 (17-84)||(27401575-27401642)
chr2 (17-86)||(20264502-20264571)
chr2 (22-86)||(37379682-37379746)
chr2 (22-86)||(20179904-20179967)
chr2 (22-64)||(38991898-38991940)
chr2 (17-65)||(16092647-16092695)
chr2 (22-86)||(16092561-16092626)
chr2 (36-83)||(20264593-20264641)
chr2 (22-86)||(27401588-27401652)
[»] chr5 (13 HSPs)
chr5 (17-86)||(29496789-29496858)
chr5 (17-86)||(29496834-29496903)
chr5 (17-86)||(29496744-29496813)
chr5 (22-86)||(29496879-29496943)
chr5 (36-86)||(39436973-39437023)
chr5 (22-87)||(19076601-19076666)
chr5 (21-76)||(23959861-23959916)
chr5 (68-123)||(28711003-28711058)
chr5 (22-86)||(29496894-29496958)
chr5 (22-72)||(39436927-39436977)
chr5 (17-74)||(23959878-23959935)
chr5 (28-72)||(14048126-14048170)
chr5 (25-65)||(39436949-39436989)
[»] scaffold0024 (2 HSPs)
scaffold0024 (51-162)||(106966-107081)
scaffold0024 (38-133)||(109063-109162)
[»] scaffold0281 (4 HSPs)
scaffold0281 (18-86)||(852-920)
scaffold0281 (17-86)||(896-965)
scaffold0281 (17-86)||(941-1010)
scaffold0281 (17-72)||(986-1041)
[»] chr6 (13 HSPs)
chr6 (22-86)||(9547898-9547962)
chr6 (37-87)||(19770014-19770064)
chr6 (29-79)||(27572963-27573013)
chr6 (36-86)||(19891954-19892004)
chr6 (22-86)||(28708788-28708852)
chr6 (17-79)||(3851927-3851989)
chr6 (22-64)||(9547883-9547925)
chr6 (17-59)||(19770027-19770069)
chr6 (17-65)||(27572931-27572980)
chr6 (17-57)||(9547938-9547978)
chr6 (22-66)||(19891724-19891768)
chr6 (17-49)||(19891980-19892012)
chr6 (23-59)||(22469043-22469079)
[»] scaffold0498 (4 HSPs)
scaffold0498 (17-170)||(10020-10174)
scaffold0498 (37-86)||(9995-10044)
scaffold0498 (17-76)||(9990-10049)
scaffold0498 (22-64)||(10010-10052)
[»] scaffold0323 (2 HSPs)
scaffold0323 (17-72)||(15533-15588)
scaffold0323 (119-170)||(15583-15634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-169)||(172245-172396)
[»] scaffold0449 (3 HSPs)
scaffold0449 (22-91)||(215-284)
scaffold0449 (25-86)||(235-296)
scaffold0449 (17-57)||(219-259)
[»] scaffold0139 (1 HSPs)
scaffold0139 (28-65)||(22674-22711)
[»] scaffold0679 (1 HSPs)
scaffold0679 (22-86)||(2351-2415)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 32944683 - 32944853
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaat 116  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  32944683 aatatcacatctttatataacacatttttaaatcacacatcttcaaatagtatatctttatataacacattattttcacatcgtggaataacacatcaat 32944782  T
Q  117 ttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaattaatatctaaccaattcaa 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32944783 ttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaattaatatctaaccaattcaa 32944853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 11509675 - 11509606
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  11509675 aatatcacatctttatataaaacatctttaaatcacacatcttcaaatagcacatctttatataacacat 11509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 18148664 - 18148594
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    |||||||||||||||||| ||||||| |||||| |||||||||||||||  ||||||||||||||||||||    
T  18148664 aatatcacatctttatatgacacatcgttaaatcacacatcttcaaataacacatctttatataacacatt 18148594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 11509630 - 11509561
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||| |||||||    
T  11509630 aatagcacatctttatataacacatctttaaatcacacatcttcaaataacacatccttatagaacacat 11509561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 22530076 - 22530012
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||| |||||    
T  22530076 cacatctttatataacacatctttatatcacacatattcaaataatacatctttatatagcacat 22530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 34706124 - 34706191
Alignment:
Q  16 gaatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacac 84  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||    
T  34706124 gaatattacatctttatataacacat-tttaaatcacacatcttcaactagcacatctttatataacac 34706191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 34706054 - 34706104
Alignment:
Q  37 cacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  34706054 cacatctttatataacacatcttcaaatagcaaatctttatataacacatt 34706104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 34706087 - 34706150
Alignment:
Q  25 atctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacatt 87  Q
    ||||||||||||||||| |||||||| || |||| || |||| |||||||||||||||||||||    
T  34706087 atctttatataacacatttttaaatagcatcatcatcgaatattacatctttatataacacatt 34706150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 18148629 - 18148566
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    |||||||| | |||||||||||||| |||||||||  |||||||  ||||||||||||||||||||    
T  18148629 cacatcttcaaataacacatctttatataacacat--tcaaatatcacatctttatataacacatt 18148566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 22530030 - 22529988
Alignment:
Q  23 acatctttatataacacatctttaaataacacatcttcaaata 65  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  22530030 acatctttatatagcacatctttaaattacacatcttcaaata 22529988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 22530016 - 22529931
Alignment:
Q  22 cacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaata 106  Q
    |||||||||| || ||||||||| |||||||| |||| |||||||  ||||| ||| ||||||||| | || ||||||||||||||    
T  22530016 cacatctttaaattacacatcttcaaataacatcatcgtcaaatacaacatcgttaaataacacatcaattacacatcgttaaata 22529931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 34706174 - 34706217
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaata 65  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||    
T  34706174 cacatctttatataacacgtctttaaatcacacatctttaaata 34706217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 3386523 - 3386585
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatat 79  Q
    |||| |||||||||| |||||||||||||| || ||||||||| | |||| |||||| |||||    
T  3386523 aataacacatctttagataacacatctttatatgacacatctttatatagcacatctctatat 3386585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 18148591 - 18148549
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatctt 59  Q
    ||||||||||||||||||||||||| ||||||| | |||||||    
T  18148591 aatatcacatctttatataacacatttttaaatgaaacatctt 18148549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 34706049 - 34706091
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatctt 59  Q
    |||||||||||||||||||||||||||| ||||| || |||||    
T  34706049 aatatcacatctttatataacacatcttcaaatagcaaatctt 34706091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 11509934 - 11509889
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagt 67  Q
    |||||||| ||||| ||||||||| ||| |||||||||||||||||    
T  11509934 cacatcttaatatatcacatcttttaattacacatcttcaaatagt 11509889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 11391864 - 11391800
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||| ||||||||||||||||||  ||| ||| |||| ||||   |||||||||||||||||||    
T  11391864 cacatgtttatataacacatctttgtatagcacgtctttaaatctcacatctttatataacacat 11391800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 22530061 - 22529997
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||| |||||| || |||||| ||||||| | |||| ||||||||| || ||||||    
T  22530061 cacatctttatatcacacatattcaaataatacatctttatatagcacatctttaaattacacat 22529997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 34706021 - 34706073
Alignment:
Q  35 aacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||| || |||| |||||||  |||||||||||||||||||    
T  34706021 aacacatctttaaatagcatcatcgtcaaatatcacatctttatataacacat 34706073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 52466339 - 52466270
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  52466339 aatatcacatctttatataacacatctttaaatcacacatcttcaaatagcacatctttatataccacat 52466270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 3472789 - 3472720
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||    
T  3472789 aatatcacatctttatataacacatctttaaatcacacatctttaaatagcacatcttcatataacacat 3472720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 52466294 - 52466141
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaat 116  Q
    |||| |||||||||||||| ||||||||||||| | |||||||||||||  |||| ||||||||||||||| ||||||| || | | ||||  ||  |||    
T  52466294 aatagcacatctttatataccacatctttaaatcatacatcttcaaataacacatttttatataacacatttttttcacgtcatcagataattcacaaat 52466195  T
Q  117 ttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 170  Q
    | ||| | |||||||||||||  ||| ||||||  |||||||| || |||||||    
T  52466194 tacacttaatcaaataattcatcaattacacttcgttaaataactcatcaatta 52466141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 3476002 - 3476150
Alignment:
Q  23 acatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcac 121  Q
    |||||||||||||||||||||||||||| || | || | |||||  ||||| ||| ||| ||| | | || ||||| ||||| | ||  |||||||||||    
T  3476002 acatctttatataacacatctttaaatagcatcgtcgttaaataaaacatcattaaatagcacttcagttacacatagttaattcacgtatcaatttcac 3476101  T
Q  122 atcatcaaataattcacaaatcacacttaattaaataattcctcaatta 170  Q
    ||||||| ||| ||||||||||||||||| | ||||||||| |||||||    
T  3476102 atcatcatatagttcacaaatcacacttagtcaaataattcatcaatta 3476150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 39728136 - 39728065
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttca-aatagtacatctttatataacacatt 87  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || |  ||||||||||||||||||||    
T  39728136 aatatcacatctttatataacacatctttaaatcacacatcttcagaaaaacacatctttatataacacatt 39728065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3586241 - 3586289
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaata 65  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3586241 aatatcacatctttatataacacatctttaaatcacacatcttcaaata 3586289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 17737339 - 17737415
Alignment:
Q  93 cacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 170  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||| ||||| ||| |||||||    
T  17737339 cacatcgttaaata-cttatcaatttcacatcatcaaataattcacaaattatacttaatcaaatatttcatcaatta 17737415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 15778229 - 15778165
Alignment:
Q  23 acatctttatataa-cacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||  |||||||||||||||||||    
T  15778229 acatctttatataaacacatttttaaatcacacatcttcaaataagacatctttatataacacat 15778165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 3475966 - 3476025
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    ||||||||||||||||||||||||||||||||| | ||||||| | |||  |||||||||    
T  3475966 aatatcacatctttatataacacatctttaaatcatacatctttatataacacatcttta 3476025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 18694545 - 18694494
Alignment:
Q  20 atcacatctttatataacacatctttaaataacacatcttcaaatagtacat 71  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  18694545 atcacatctttatataacacatcttgaaatcaaacatcttcaaatagcacat 18694494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 18710064 - 18710013
Alignment:
Q  20 atcacatctttatataacacatctttaaataacacatcttcaaatagtacat 71  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  18710064 atcacatctttatataacacatcttgaaatcaaacatcttcaaatagcacat 18710013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 3475971 - 3476020
Alignment:
Q  37 cacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||| |||||||||||| ||||  ||||||||||||||||||||    
T  3475971 cacatctttatataacacatctttaaatcatacatctttatataacacat 3476020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 18539114 - 18539049
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    |||||||||||||||||||||||||||| | || |  |||||||  |||| |||||||||||||||    
T  18539114 cacatctttatataacacatctttaaatcaaacttaatcaaataacacatatttatataacacatt 18539049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 5842095 - 5842159
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  5842095 cacatgtttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 5842159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 3263004 - 3262953
Alignment:
Q  36 acacatctttaaataacac-atcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  3263004 acacatctttaaataacaccattgtcaaatattacatctttatataacacat 3262953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 15778183 - 15778120
Alignment:
Q  23 acatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||||||| ||| ||||||||| || ||| |||| |||| || ||||||    
T  15778183 acatctttatataacacatctttgaatcacacatctttaactagcacatttttaaatcacacat 15778120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 18539149 - 18539090
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||| | |||  |||||||||    
T  18539149 aatatcacacctttacataacacatctttaaatcacacatctttatataacacatcttta 18539090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 18706266 - 18706231
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatc 57  Q
    |||||||||||||||||||||||||||| |||||||    
T  18706266 cacatctttatataacacatctttaaatcacacatc 18706231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 3472754 - 3472704
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatc 72  Q
    |||||||||| ||| |||||||| | |||||||||| ||||||||||||||    
T  3472754 cacatctttaaatagcacatcttcatataacacatcgtcaaatagtacatc 3472704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 18539074 - 18539025
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatag 66  Q
    |||| ||||| |||||||||||||| ||||||| ||||||||| ||||||    
T  18539074 aataacacatatttatataacacatttttaaatcacacatctttaaatag 18539025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 52273005 - 52273154
Alignment:
Q  22 cacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttca 120  Q
    ||||||||||||||||||||||||||||| || |||| |||||||  ||||| ||| ||| ||| | |  | ||||| ||||| | ||| ||||||||||    
T  52273005 cacatctttatataacacatctttaaatagcatcatcgtcaaataaaacatcattaaatagcacttcaactacacatagttaattcacatatcaatttca 52273104  T
Q  121 catcatcaaataattcacaaatcacacttaattaaataattcctcaatta 170  Q
    ||| |||||||||||||||||| ||||||| | ||||||||| |||||||    
T  52273105 cattatcaaataattcacaaattacacttagtcaaataattcatcaatta 52273154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 23633123 - 23633054
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  23633123 aatattacatctttatataacacatctttaaatcacacatcttcaaatagcacatctttgtataacacat 23633054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 90239 - 90306
Alignment:
Q  20 atcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||  ||||||||||||||||||||    
T  90239 atcacatctttatctaacacatcttgaaattacacatcttcaaataacacatctttatataacacatt 90306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 12785272 - 12785343
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttca-aatagtacatctttatataacacatt 87  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| || |  ||||||||||||||||||||    
T  12785272 aatatcacatctttatataacacatctttaaatcacacatcttcagaaaaacacatctttatataacacatt 12785343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 9132359 - 9132290
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| ||||||||||||||||||||||||||||  |||| |||||||||  |||||||||||||||||||    
T  9132359 aataacacatctttatataacacatctttaaatcccacaacttcaaataacacatctttatataacacat 9132290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 9132404 - 9132335
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| ||||||||||||||||||||||||||||  |||| |||||||||  |||||||||||||||||||    
T  9132404 aatagcacatctttatataacacatctttaaatcgcacaacttcaaataacacatctttatataacacat 9132335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 41137927 - 41137858
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||| ||| ||||||| ||||||| |||||| ||||||||| |||||||| ||||||||||    
T  41137927 aatatcacatcttaataaaacacatatttaaatcacacatattcaaatagcacatctttgtataacacat 41137858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 23633013 - 23632958
Alignment:
Q  104 ataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataa 159  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||    
T  23633013 ataacacatcattttcacatcatcaaataattcacaaattacacttagtcaaataa 23632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 9132438 - 9132380
Alignment:
Q  28 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||| | ||||||  |||||||||||||||| |||||||||||||||||||    
T  9132438 tttatataacacgtatttaaaccacacatcttcaaatagcacatctttatataacacat 9132380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 23633161 - 23633099
Alignment:
Q  25 atctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||||||||||| || | || ||||||| ||||||||||||||||||||    
T  23633161 atctttatataacacatctttaaatagcatcgtcatcaaatattacatctttatataacacat 23633099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 23633078 - 23632984
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaata----gtacatctttatataacacattattttcacatcgttaaataa 107  Q
    |||| ||||||||| |||||||||||||||||| ||||| |||||||||      |||| |||||||||||||| ||||||||||| | ||||||    
T  23633078 aatagcacatctttgtataacacatctttaaatcacacaacttcaaataacatacacatttttatataacacatcattttcacatcatcaaataa 23632984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 23633514 - 23633441
Alignment:
Q  85 attattttcacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaata 158  Q
    |||| ||||||||| | ||||| |||||||||| |||||||||||||||| ||||||| ||||||  |||||||    
T  23633514 attaatttcacatcttcaaatagcacatcaattacacatcatcaaataatacacaaattacacttctttaaata 23633441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 90271 - 90335
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||| | |||||||||||||| ||||||||| || | |||| |||||||||||||||||||    
T  90271 cacatcttcaaataacacatctttatataacacatttttatatagcacatctttatataacacat 90335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 41137882 - 41137775
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaat 116  Q
    |||| ||||||||| |||||||||||||||||| ||||| |||||||||  |||||| |||| |||          |||||| ||||||  |||||||||    
T  41137882 aatagcacatctttgtataacacatctttaaatcacacaacttcaaataacacatctatata-aac----------cacatcattaaat--cacatcaat 41137796  T
Q  117 ttcacatcatcaaataattca 137  Q
    |||||||||||||||||||||    
T  41137795 ttcacatcatcaaataattca 41137775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 9132314 - 9132265
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatag 66  Q
    |||| |||||||||||||||||||||||||||| | |||| |||||||||    
T  9132314 aataacacatctttatataacacatctttaaatcatacattttcaaatag 9132265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 23633198 - 23633145
Alignment:
Q  33 ataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||| |||||| ||||| |||||| | |||||||||||||||||    
T  23633198 ataacacatctttatataacatatctttaaatagcaaatctttatataacacat 23633145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 52272930 - 52272994
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||| || ||||||||||||||| || ||||||||||||| |  |||||||||||| ||||||    
T  52272930 cacatcgttgtataacacatctttatatcacacatcttcaaacatcacatctttatatgacacat 52272994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 52272973 - 52273029
Alignment:
Q  20 atcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    ||||||||||||||| |||||||||||||| ||||||||| | |||  |||||||||    
T  52272973 atcacatctttatatgacacatctttaaatcacacatctttatataacacatcttta 52273029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 18514723 - 18514680
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaata 65  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||    
T  18514723 cacatctttaaataacacatctttaaatcacacattttcaaata 18514680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 23633225 - 23633178
Alignment:
Q  36 acacatctttaaataacacatcttcaaatagtacatctttatataaca 83  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||||    
T  23633225 acacatctttatataacacatcttcgaataacacatctttatataaca 23633178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 23633224 - 23633187
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatctt 59  Q
    |||||||||||||||||||||||  |||||||||||||    
T  23633224 cacatctttatataacacatcttcgaataacacatctt 23633187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 23633200 - 23633140
Alignment:
Q  16 gaatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    ||||| ||||||||||||||||| ||||||||||| || ||||| | |||  |||||||||    
T  23633200 gaataacacatctttatataacatatctttaaatagcaaatctttatataacacatcttta 23633140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 52272990 - 52273034
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatag 66  Q
    |||||||||| || ||||||||||| |||||||||||| ||||||    
T  52272990 cacatctttaaatcacacatctttatataacacatctttaaatag 52273034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 11150598 - 11150668
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||    
T  11150598 aatatcacatctttatataacacatctttaaatcacacatcttcaaataacacatttttatataacacatt 11150668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 15703750 - 15703808
Alignment:
Q  28 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  15703750 tttatataacacatctttaaatcacacatcttcaaatagcacatctttatataacacat 15703808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 42597313 - 42597243
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    |||| ||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  42597313 aataacacatatttatataacacatctttaaatcatacatcttcaaatagtacatatttatataacacatt 42597243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 23973118 - 23973187
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||||||||||||||||| |||||  ||||||||| ||||| |||||||| ||||    
T  23973118 aatatcacatctttatataacacatctttaaatcacacaatttcaaatagcacatcattatataatacat 23973187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25127160 - 25127107
Alignment:
Q  28 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataa 81  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25127160 tttatataacacatctttaaatcacacatcttcaaataatacatctttatataa 25127107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 15703784 - 15703843
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  15703784 aatagcacatctttatataacacatcttcaaataacacatcttcaaataacacatcttta 15703843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 35462366 - 35462293
Alignment:
Q  97 tcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 170  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| ||| | | | ||||||||| |||||||    
T  35462366 tcgttaattaacacatcaattttacatcatcaaataattcacaaattacaataagtcaaataattcatcaatta 35462293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 15242160 - 15242011
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattatt----ttcacatcgttaaataacacatcaatt 117  Q
    |||||||||| ||||||| ||||||||| |||||| ||||||||  ||||||||| ||| |||  |  |    | | |||| ||||||| ||| ||| ||    
T  15242160 cacatctttaaataacacgtctttaaatcacacattttcaaataacacatctttacataccaccgtcgtcaaatacgcatcattaaatagcacttcagtt 15242061  T
Q  118 tcacatcatcaaataattcacaaatcacacttaattaaataattcctcaa 167  Q
      ||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  15242060 atacatcatcaaataattcacaaattacacttaatcaaataattcatcaa 15242011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 37838624 - 37838560
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  37838624 cacatctttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 37838560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 42597353 - 42597289
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  42597353 cacatctttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 42597289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 19612796 - 19612737
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    ||||||||||||||||||||||||| ||||||| | |||||||||||||  |||||||||    
T  19612796 aatatcacatctttatataacacatatttaaatcagacatcttcaaataacacatcttta 19612737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 19612835 - 19612772
Alignment:
Q  24 catctttatat-aacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||| ||||||||||||||| | |||||| ||||||  |||||||||||||||||||    
T  19612835 catctttatatcaacacatctttaaatcatacatctacaaatatcacatctttatataacacat 19612772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 13885361 - 13885253
Alignment:
Q  37 cacatctttaaata---acacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcacatcatcaaataa 133  Q
    ||||||||||||||   ||||||||| ||||   ||||||| | ||| ||||| | ||||  ||| | |||||| ||||||||||||||||||||| |||    
T  13885361 cacatctttaaatagtcacacatctttaaatcacacatcttcaaatagcacatcaatttcttatcatcaaataatacatcaatttcacatcatcaagtaa 13885262  T
Q  134 ttcacaaat 142  Q
    |||||||||    
T  13885261 ttcacaaat 13885253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 14644896 - 14645047
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaa 115  Q
    ||||||||||||||||||  ||||| |||||||| || |||| |||||||  ||||  ||| ||||||| | | || |||||| |||| ||||| |||||    
T  14644896 aatatcacatctttatat--cacatttttaaatagcatcatcgtcaaatacaacattattaaataacacttcaattacacatcattaattaacatatcaa 14644993  T
Q  116 tttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatt 169  Q
    | | |||||||||| ||| ||| | || | ||||||| ||||||||| ||||||    
T  14644994 tgttacatcatcaattaactcatatattatacttaatcaaataattcatcaatt 14645047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 15703814 - 15703883
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| |||||||| | ||||||||||||||||| ||| |||||||||||  |||||||| |||| |||||    
T  15703814 aataacacatcttcaaataacacatctttaaatcacaaatcttcaaataacacatctttgtataccacat 15703883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 9564965 - 9564917
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaata 65  Q
    ||||||||||| ||||||| ||||||||||||| ||||||| |||||||    
T  9564965 aatatcacatccttatatagcacatctttaaatcacacatcctcaaata 9564917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 13885366 - 13885308
Alignment:
Q  17 aatatcacatctttatata---acacatctttaaataacacatcttcaaatagtacatc 72  Q
    ||||||||||||||| |||   |||||||||||||| |||||||||||||||| |||||    
T  13885366 aatatcacatctttaaatagtcacacatctttaaatcacacatcttcaaatagcacatc 13885308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 15703774 - 15703838
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||| | ||| |||||||||| ||||||||||||||||||  ||||||| | |||||||||    
T  15703774 cacatcttcaaatagcacatctttatataacacatcttcaaataacacatcttcaaataacacat 15703838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 23973091 - 23973142
Alignment:
Q  36 acacatctttaaataaca-catcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||| |||| |||||||  |||||||||||||||||||    
T  23973091 acacatctttaaataacatcatcatcaaatatcacatctttatataacacat 23973142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 18875383 - 18875425
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaat 64  Q
    |||||| |||||||||||||||||| |||||||||| ||||||    
T  18875383 cacatccttatataacacatctttatataacacatcgtcaaat 18875425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 18875348 - 18875417
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||| ||  | ||||||| ||||||| | | |||  |||||||||||||||||||    
T  18875348 aatatcacatctttatatagcatgtatttaaatcacacatccttatataacacatctttatataacacat 18875417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 42145628 - 42145713
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataa 107  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||||| ||||||||||| | ||||||    
T  42145628 cacatctttatattacacatctttaaatcacacatattcaaataacacatctttatataacacatcattttcacatcatcaaataa 42145713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 9882567 - 9882631
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataa 81  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  9882567 aatattacatctttatataacacatctttaaatcacacatcttcaaatagcacatctttatataa 9882631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 12577132 - 12577197
Alignment:
Q  21 tcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||    
T  12577132 tcacatctttatataacacatctttaaatcacacatcttcaaatagcacatatttatataatacat 12577197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 9882521 - 9882591
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||||||||||||| ||||| || |||| ||||||| ||||||||||||||||||||    
T  9882521 aatatcacatctttatataacacatcttcaaatagcatcatcatcaaatattacatctttatataacacat 9882591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 40387802 - 40387865
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatata 80  Q
    |||| |||||||||||||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  40387802 aatagcacatctttatataactcatctttaaatcacacatcttcaaataacacatctttatata 40387865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 42145598 - 42145750
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattat----tttcacatcgttaaataacacatcaatt 117  Q
    |||||||||| |||||||||||||| || ||||||||| | ||   ||||||||| || ||||||  |    |  |||||| ||| ||||||||||| ||    
T  42145598 cacatctttagataacacatctttacatgacacatctttatattacacatctttaaatcacacatattcaaataacacatctttatataacacatcattt 42145697  T
Q  118 tcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 170  Q
    |||||||||||||||||||| | || ||||||| | ||||||||| |||||||    
T  42145698 tcacatcatcaaataattcatacattacacttagtcaaataattcatcaatta 42145750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 17289899 - 17289958
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  17289899 aataacacatctttatagaacacatctttaaatcacacatcttcaaacattacatcttta 17289958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 40387764 - 40387822
Alignment:
Q  25 atctttatataacacatctttaaa-taacacatcttcaaatagtacatctttatataac 82  Q
    |||||||||| ||||||||||||| | |||||||||||||||| |||||||||||||||    
T  40387764 atctttatatgacacatctttaaaatcacacatcttcaaatagcacatctttatataac 40387822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 12577173 - 12577221
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaata 65  Q
    |||| ||||| ||||||||| |||||||||||| |||||||||||||||    
T  12577173 aatagcacatatttatataatacatctttaaatcacacatcttcaaata 12577221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 12577090 - 12577152
Alignment:
Q  24 catctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||| |||||||||  ||||||| |||| ||||   |||||||||||||||||||    
T  12577090 catctttatatagcacatctttgtataacacgtctttaaatctcacatctttatataacacat 12577152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 12577072 - 12577120
Alignment:
Q  36 acacatctttaaataacacatcttcaaatagtacatctttatataacac 84  Q
    ||||||||||||||||| |||||| | |||| |||||||| ||||||||    
T  12577072 acacatctttaaataactcatctttatatagcacatctttgtataacac 12577120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 37379722 - 37379792
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    |||| ||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  37379722 aataacacatatttatataacacatctttaaatcatacatcttcaaatagtacatatttatataacacatt 37379792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 20264614 - 20264547
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||||||||||||  || |||||| |||||||||||||||| |||||||||||||||||||    
T  20264614 aatatcacatctttatataaca--tccttaaatcacacatcttcaaatagcacatctttatataacacat 20264547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 16092602 - 16092671
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||  ||||||||||||| |||||    
T  16092602 aatatcacatttttatataacacatctttaaatcaaacatcttcaaataacacatctttatatagcacat 16092671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 27401642 - 27401575
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacac 84  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||  |||| ||||||||||||    
T  27401642 aataacacatctttatatgacacatctttaaatcacacatcttcaaataacacatatttatataacac 27401575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 20264571 - 20264502
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| |||||||||||||||||||||||||||| | | || ||||||||  |||||||||||||||||||    
T  20264571 aatagcacatctttatataacacatctttaaatcataaatattcaaataacacatctttatataacacat 20264502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 37379682 - 37379746
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  37379682 cacatctttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 37379746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 20179904 - 20179967
Alignment:
Q  22 cacatctttatataacacatctttaaat-aacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||||  |||||||||||||||||||    
T  20179904 cacatatttgtataacacatctttatatcaacacatcttcaaata--acatctttatataacacat 20179967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 38991898 - 38991940
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaat 64  Q
    |||||||||||||||||||||||||||| |||| |||||||||    
T  38991898 cacatctttatataacacatctttaaatcacacttcttcaaat 38991940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 16092647 - 16092695
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaata 65  Q
    |||| |||||||||||||| |||||| |||||| |||||||||||||||    
T  16092647 aataacacatctttatatagcacatcattaaatcacacatcttcaaata 16092695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 16092561 - 16092626
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttc-aaatagtacatctttatataacacat 86  Q
    |||||||||| |||||||||||||| || ||||||| || |||||  |||| ||||||||||||||    
T  16092561 cacatctttagataacacatctttatatgacacatcatcaaaatatcacatttttatataacacat 16092626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 20264641 - 20264593
Alignment:
Q  36 acacatctttaaataaca-catcttcaaatagtacatctttatataaca 83  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||||    
T  20264641 acacatctttaaataacatcatcgtcaaatatcacatctttatataaca 20264593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 27401652 - 27401588
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||| |||||||||||||| || ||||||||| ||||   ||||||| | |||||||||    
T  27401652 cacatctttaaataacacatctttatatgacacatctttaaatcacacatcttcaaataacacat 27401588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 29496858 - 29496789
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||    
T  29496858 aatagcacatctttatataacacatctttaaatcacacaacttcaaatagcacatgtttatataacacat 29496789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 29496903 - 29496834
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| ||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  29496903 aataacacatatttatataacacatctttaaatcacacaacttcaaatagcacatctttatataacacat 29496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 29496813 - 29496744
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| ||||| |||||||||||||||||||||| ||||| |||||||||  |||||| ||||||||||||    
T  29496813 aatagcacatgtttatataacacatctttaaatcacacaacttcaaataacacatctatatataacacat 29496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 29496943 - 29496879
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||  |||| ||||||||||||||    
T  29496943 cacatctttatataacacatctctaaatcacacatctttaaataacacatatttatataacacat 29496879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 39437023 - 39436973
Alignment:
Q  36 acacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  39437023 acacatctttaaataacacatcttcatatggtagatctttatataacacat 39436973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 19076601 - 19076666
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    |||||||||| ||||||| ||||||||| |||||||||||| ||| |||||| |||| ||||||||    
T  19076601 cacatctttaaataacacgtctttaaattacacatcttcaagtagcacatctctatacaacacatt 19076666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 23959916 - 23959861
Alignment:
Q  21 tcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||  ||||||||    
T  23959916 tcacatctttatataacacatttttaaatcatacatcttcaaatagcgcatcttta 23959861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 28711058 - 28711003
Alignment:
Q  68 acatctttatataacacattattttcacatcgttaaataacacatcaatttcacat 123  Q
    ||||| ||| ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  28711058 acatcattaaataacacatcaatttcacatcgttaaacaacacatcaatttcacat 28711003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 29496958 - 29496894
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||| ||||||||||| |||||||||||  ||||   ||||||||| |||||||||    
T  29496958 cacatctttatatgacacatctttatataacacatctctaaatcacacatctttaaataacacat 29496894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 39436977 - 39436927
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatc 72  Q
    ||||||| || || |||||||||||||||||||||| ||||||| ||||||    
T  39436977 cacatctctaaatcacacatctttaaataacacatcgtcaaataatacatc 39436927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 23959935 - 23959878
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctt 74  Q
    ||||||||||||||||||  |||||||||| ||||||||| || ||||  ||||||||    
T  23959935 aatatcacatctttatatgtcacatctttatataacacatttttaaatcatacatctt 23959878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 14048126 - 14048170
Alignment:
Q  28 tttatataacacatctttaaataacacatcttcaaatagtacatc 72  Q
    |||||||||||||||||||||  ||||||||||| |||| |||||    
T  14048126 tttatataacacatctttaaagcacacatcttcacatagcacatc 14048170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 39436989 - 39436949
Alignment:
Q  25 atctttatataacacatctttaaataacacatcttcaaata 65  Q
    ||||||||||||||||||| ||||| ||||||||| |||||    
T  39436989 atctttatataacacatctctaaatcacacatctttaaata 39436949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 106966 - 107081
Alignment:
Q  51 acacatcttcaaatagtacatctttatataacacattatt----ttcacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcaca 146  Q
    |||||||||||||||| | || ||||||||||||||  ||    | |||||  | |||||||||||||||||||||||||||||||| |||||||| |||    
T  106966 acacatcttcaaatagcaaatatttatataacacatctttaaaatacacattatcaaataacacatcaatttcacatcatcaaataactcacaaattaca 107065  T
Q  147 cttaattaaataattc 162  Q
    |||| | |||||||||    
T  107066 cttagtcaaataattc 107081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 109063 - 109162
Alignment:
Q  38 acatctttaaataacacatcttcaaatagtacatctttatataacacattatt----ttcacatcgttaaataacacatcaatttcacatcatcaaataa 133  Q
    |||||||||||| |||||||||||||||| | || ||||||||||||||  ||    | |||||  | |||||||||||||||||||||||| |||||||    
T  109063 acatctttaaatcacacatcttcaaatagcaaatatttatataacacatctttaaaatacacattatcaaataacacatcaatttcacatcagcaaataa 109162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 852 - 920
Alignment:
Q  18 atatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||||  ||||||||||| |||||||    
T  852 atatcacatctttatataacacatctttaaatcacacatatgcaaataacacatctttatagaacacat 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 896 - 965
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| |||||||||||| ||||||||||||||| | |||||||||||||  |||| ||||||||||||||    
T  896 aataacacatctttatagaacacatctttaaatcaaacatcttcaaataacacatatttatataacacat 965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 941 - 1010
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||| |||||  |||| ||||||||||||||    
T  941 aataacacatatttatataacacatctttgaatcacacatctttaaataacacatttttatataacacat 1010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 986 - 1041
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatc 72  Q
    |||| ||||| |||||||||||||||||||||| |||||| ||||||||| |||||    
T  986 aataacacatttttatataacacatctttaaatcacacattttcaaatagcacatc 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 9547898 - 9547962
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||||||    
T  9547898 cacatctttatataacacatctttaaatcacacatctacaaataacacgtctttatataacacat 9547962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 19770064 - 19770014
Alignment:
Q  37 cacatctttaaataacacatcttcaaatagtacatctttatataacacatt 87  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  19770064 cacatctttaaattacacatcttcaaataacacatctttatataacacatt 19770014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 27573013 - 27572963
Alignment:
Q  29 ttatataacacatctttaaataacacatcttcaaatagtacatctttatat 79  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  27573013 ttatataacacatctttaaaacacacatcttcaaatagcacatctttatat 27572963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 19891954 - 19892004
Alignment:
Q  36 acacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    |||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  19891954 acacatctttaaatcacacattttcaaataacacatctttatataacacat 19892004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 28708788 - 28708852
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  28708788 cacatgtttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 28708852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3851989 - 3851927
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatat 79  Q
    |||| |||||||||| |||||||||||||| || ||||||||| | |||| |||||| |||||    
T  3851989 aataacacatctttaaataacacatctttatatgacacatctttatatagcacatctctatat 3851927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 9547883 - 9547925
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaat 64  Q
    |||||||||| |||||||||||||| |||||||||||| ||||    
T  9547883 cacatctttagataacacatctttatataacacatctttaaat 9547925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 19770069 - 19770027
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatctt 59  Q
    ||||||||||||||| || ||||||||| ||||||||||||||    
T  19770069 aatatcacatctttaaattacacatcttcaaataacacatctt 19770027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 27572980 - 27572931
Alignment:
Q  17 aatatcacatctttatat-aacacatctttaaataacacatcttcaaata 65  Q
    |||| ||||||||||||| |||||||||| |||||||||||| |||||||    
T  27572980 aatagcacatctttatatcaacacatcttcaaataacacatcatcaaata 27572931  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 9547938 - 9547978
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatc 57  Q
    |||| ||| |||||||||||||||||||||||| |||||||    
T  9547938 aataacacgtctttatataacacatctttaaatcacacatc 9547978  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 19891724 - 19891768
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatag 66  Q
    |||||||| | ||| ||||||||||||| ||||||||||||||||    
T  19891724 cacatcttaaaatatcacatctttaaattacacatcttcaaatag 19891768  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 19891980 - 19892012
Alignment:
Q  17 aatatcacatctttatataacacatctttaaat 49  Q
    |||| ||||||||||||||||||||||||||||    
T  19891980 aataacacatctttatataacacatctttaaat 19892012  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 22469043 - 22469079
Alignment:
Q  23 acatctttatataacacatctttaaataacacatctt 59  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  22469043 acatctttaaataacacatctttatataacacatctt 22469079  T

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Target: scaffold0498 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 10020 - 10174
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaa 115  Q
    |||| ||||||||||||||||||||||||||||  || |||| || ||| | ||||| ||| | ||||| | | ||  |||||||||| ||||| |||||    
T  10020 aataacacatctttatataacacatctttaaattgcatcatcgtcgaat-gcacatcattaaaaaacacttcagttatacatcgttaattaacatatcaa 10118  T
Q  116 -tttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 170  Q
     ||| ||||||||||||||||||||||| | |||| || ||||||||| |||||||    
T  10119 attttacatcatcaaataattcacaaattatacttcatcaaataattcatcaatta 10174  T

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Target: scaffold0498; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 9995 - 10044
Alignment:
Q  37 cacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||||||||    
T  9995 cacatctttaaatcacacatctttaaataacacatctttatataacacat 10044  T

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Target: scaffold0498; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 9990 - 10049
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatcttta 76  Q
    |||| |||||||||| || |||||||||||||||||||||||| | |||  |||||||||    
T  9990 aatagcacatctttaaatcacacatctttaaataacacatctttatataacacatcttta 10049  T

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Target: scaffold0498; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 10010 - 10052
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaat 64  Q
    |||||||||| |||||||||||||| |||||||||||| ||||    
T  10010 cacatctttaaataacacatctttatataacacatctttaaat 10052  T

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Target: scaffold0323 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 15533 - 15588
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatcttcaaatagtacatc 72  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  15533 aatatcaaatctttatataacacatctttaaattacacatcttcaaatagcacatc 15588  T

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Target: scaffold0323; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 15583 - 15634
Alignment:
Q  119 cacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 170  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| | |||||||    
T  15583 cacatcatcaaataattcacaaattacatttaatcaaataatccatcaatta 15634  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 172396 - 172245
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaa 115  Q
    ||||||||||||||||||  ||||| |||||||| || |||| |||||||  ||||  ||| ||||||| | | || |||||| |||| ||||| |||||    
T  172396 aatatcacatctttatat--cacatttttaaatagcatcatcgtcaaatacaacattattaaataacacttcaattacacatcattaattaacatatcaa 172299  T
Q  116 tttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatt 169  Q
    | | |||||||||| ||| ||| | || | ||||||| ||||||||| ||||||    
T  172298 tgttacatcatcaattaactcatatattatacttaatcaaataattcatcaatt 172245  T

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Target: scaffold0449 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 284 - 215
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattt 91  Q
    |||||||||||||| |||||||  ||||| |||||||||| |||  |||||| |||||||||||| ||||    
T  284 cacatctttatatagcacatctacaaatatcacatcttcatataacacatctatatataacacatcattt 215  T

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Target: scaffold0449; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 296 - 235
Alignment:
Q  25 atctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||||| |||||||||||||| ||| ||||||| ||||||  ||||||| |||||||||||    
T  296 atctttagataacacatctttatatagcacatctacaaatatcacatcttcatataacacat 235  T

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Target: scaffold0449; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 259 - 219
Alignment:
Q  17 aatatcacatctttatataacacatctttaaataacacatc 57  Q
    ||||||||||||| ||||||||||||| || ||||||||||    
T  259 aatatcacatcttcatataacacatctatatataacacatc 219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 22674 - 22711
Alignment:
Q  28 tttatataacacatctttaaataacacatcttcaaata 65  Q
    |||||||||||||||||||||| |||||||||||||||    
T  22674 tttatataacacatctttaaatcacacatcttcaaata 22711  T

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Target: scaffold0679 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 2415 - 2351
Alignment:
Q  22 cacatctttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 86  Q
    ||||| ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  2415 cacatgtttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 2351  T

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