View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15175_low_6 (Length: 570)
Name: NF15175_low_6
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15175_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Original strand, 9566670 - 9567210
Alignment:
| Q |
20 |
agagattcatctctataataacctacaaaaggaagaggaacatagctaaatctcaagtcctatccagaaacttggtcgctaaagatnnnnnnnnnnnnga |
119 |
Q |
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| T |
9566670 |
agagattcatctctataataacctacaaaaggaagaggaacatagctaaatctcaagtcctatccagaaacttggtcgctaaagataaaaaagaaaaaga |
9566769 |
T |
|
| Q |
120 |
agaacgaacaacaaaagtatgtctatagacctatgatagtgagtcaagtcggcccaagcatcagacaagtctttgctt-aagccgctcggttcaccctat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
9566770 |
agaacgaacaacaaaagtatgtctatagacctatgatagcaagtcaagtcggcccaagcatcagacaagtctttgctttaagccgctcggttc-ccctat |
9566868 |
T |
|
| Q |
219 |
ttaacactcctacatagtctatttattctacgatcttacctacattttggtatcgaacaaaatttgcacatgcgaatgtgctctcatgatttcaatcctt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9566869 |
ttaacactcctacatagtctatttattctacgatcttacctacattttggtatcgaacaaaatttgcacatacgaatgtgctctcatgatttcaatcctt |
9566968 |
T |
|
| Q |
319 |
gtctaactttaagcctcatcttgtctcgagtcggccc-gtcaataacatctccaagcagaagatgtgcacataactttactcttccacgctaaattgata |
417 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9566969 |
gtctaactttaagcctcatcttgtgtcgagtcggccctgtcaataacatctccaagcagaagatgtgcacataactttactcttccacgctaaattgata |
9567068 |
T |
|
| Q |
418 |
gcaacatctgtttgttcaatcctataatctttattgaaatctttcaagagagttctaactgaatcaatcaccgatggactcaacagtaacggtacaaaac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9567069 |
gcaacatctgtttgttcaatcctataatctttattgaaatctttcaagagagttctgactgaatcaatcaccgatggactcaacagtaacggtacaaaac |
9567168 |
T |
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| Q |
518 |
ctgccattgaaaatcttgccttccactttccgaacagttcat |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9567169 |
ctgccattgaaaatcttgccttccactttccgaacagttcat |
9567210 |
T |
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