View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15175_low_9 (Length: 542)

Name: NF15175_low_9
Description: NF15175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15175_low_9
NF15175_low_9
[»] chr1 (10 HSPs)
chr1 (20-532)||(2487782-2488305)
chr1 (74-136)||(7218113-7218175)
chr1 (88-137)||(15361681-15361730)
chr1 (82-136)||(25006081-25006135)
chr1 (79-137)||(30257651-30257709)
chr1 (63-139)||(9656616-9656693)
chr1 (82-131)||(27887165-27887214)
chr1 (88-137)||(28467360-28467409)
chr1 (79-131)||(17269224-17269276)
chr1 (77-109)||(39348009-39348041)
[»] chr5 (1 HSPs)
chr5 (82-137)||(34205207-34205262)
[»] chr4 (3 HSPs)
chr4 (82-137)||(49219107-49219162)
chr4 (63-137)||(51630079-51630154)
chr4 (83-123)||(11842197-11842237)
[»] chr7 (3 HSPs)
chr7 (89-139)||(49060506-49060556)
chr7 (88-135)||(24909634-24909681)
chr7 (91-135)||(24895326-24895370)
[»] chr3 (5 HSPs)
chr3 (79-137)||(21872315-21872373)
chr3 (83-131)||(24235731-24235779)
chr3 (83-137)||(37689432-37689486)
chr3 (81-131)||(53848109-53848158)
chr3 (218-283)||(49504141-49504206)
[»] chr2 (4 HSPs)
chr2 (79-137)||(43141839-43141897)
chr2 (82-137)||(11513866-11513921)
chr2 (79-137)||(43199382-43199440)
chr2 (86-114)||(20258486-20258514)
[»] chr6 (4 HSPs)
chr6 (81-137)||(4006682-4006738)
chr6 (79-139)||(18264295-18264355)
chr6 (90-151)||(27595622-27595683)
chr6 (79-151)||(2514656-2514728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (82-137)||(27544-27599)
[»] chr8 (3 HSPs)
chr8 (82-151)||(1470903-1470972)
chr8 (80-137)||(34770860-34770917)
chr8 (80-136)||(29973050-29973106)


Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 20 - 532
Target Start/End: Original strand, 2487782 - 2488305
Alignment:
Q  20 aatctgtcaaccaaggcatgtttatgttatttccattgtttcctattttcaaaattctgcaggatagtttatgaaaataacttatagcttatatccaaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487782 aatctgtcaaccaaggcatgtttatgttatttccattgtttcctattttcaaaattctgcaggatagtttatgaaaataacttatagcttatatccaaat 2487881  T
Q  120 aatttgactttactttatttatcattatagaattaagttgtttatacaaacacggatttaaatgattttgatttgacgtctcacactgacaaaagaagtt 219  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487882 aatttgactttactttatttgtcattatagaattaagttgtttatacaaacacggatttaaatgattttgatttgacgtctcacactgacaaaagaagtt 2487981  T
Q  220 tggtgtatgcagggcttgttcaatggaaccagataagacaacaatgggctggaaataaaaggtctgagagtcagacagtagctagagaaccacgaataag 319  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2487982 tggtgtatgcagggcttgttcaatggaaccagataaggcaacaatgggctggaaataaaaggtctgagagacagacagtagctagagaaccacgaataag 2488081  T
Q  320 gtaaatttcgtatgagataaaggtttttgatgttgctgaaacagcgacgccactgcgattgagactgcatcagtcgcatttgactgcaattctacgcaat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2488082 gtaaatttcgtatgagataaaggtttttgatgttgctgaaacagcgacgccactgcgattgagactgcatcagtcgcatttgactgcaattctacgcaat 2488181  T
Q  420 attaataattacattgcat-----------tgttttctatcttatgtttacatcaagtaattttcgacgtgtttgttaatttcttactgagttcatgttc 508  Q
    |||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2488182 attaataattacattgcattgttttgagtatgttttctatcttatgtttacatcaagtaattttcgacgtgtttgttaatttcttactgagttcatgttc 2488281  T
Q  509 cacacagttctaatgctacctatg 532  Q
    ||||||||||||||||||||||||    
T  2488282 cacacagttctaatgctacctatg 2488305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 7218113 - 7218175
Alignment:
Q  74 ttctgcaggatagtttatgaaaataacttatagcttatatccaaataatttgactttacttta 136  Q
    |||| |||||||| ||||||||| ||||||||||||||||  ||| |||||||||||| ||||    
T  7218113 ttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 7218175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 15361730 - 15361681
Alignment:
Q  88 ttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    ||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  15361730 ttatgaaaacagcttatagcttatatgaaaataatttgactttactttat 15361681  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 25006081 - 25006135
Alignment:
Q  82 gatagtttatgaaaataacttatagcttatatccaaataatttgactttacttta 136  Q
    ||||| ||||||||| ||||||||||||||||  ||| |||||||||||| ||||    
T  25006081 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 25006135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 30257709 - 30257651
Alignment:
Q  79 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    |||||||||||||||||| |||||| |||||||||  ||| | |||||||||| |||||    
T  30257709 caggatagtttatgaaaacaacttaaagcttatatggaaacagtttgactttattttat 30257651  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 9656693 - 9656616
Alignment:
Q  63 tattttcaaaattc-tgcaggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttattt 139  Q
    |||||||| ||||| | |||||||| ||||||| | | ||||||||||||||  ||||||||| |||||| |||||||    
T  9656693 tattttcataattcatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattttattt 9656616  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 27887165 - 27887214
Alignment:
Q  82 gatagtttatgaaaataacttatagcttatatccaaataatttgacttta 131  Q
    ||||||||||||||| ||||||||||||||||  ||||  ||||||||||    
T  27887165 gatagtttatgaaaacaacttatagcttatatggaaattgtttgacttta 27887214  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 28467360 - 28467409
Alignment:
Q  88 ttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    ||||||||| ||||| ||||||||||  |||||||||||||||| |||||    
T  28467360 ttatgaaaacaacttgtagcttatatgaaaataatttgactttattttat 28467409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 17269276 - 17269224
Alignment:
Q  79 caggatagtttatgaaaataacttatagcttatatccaaataatttgacttta 131  Q
    |||||||| ||||||||| ||||||| ||||||||  ||| ||||||||||||    
T  17269276 caggatagcttatgaaaacaacttattgcttatatgaaaacaatttgacttta 17269224  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 39348009 - 39348041
Alignment:
Q  77 tgcaggatagtttatgaaaataacttatagctt 109  Q
    |||||||||||||||||||| ||||||||||||    
T  39348009 tgcaggatagtttatgaaaacaacttatagctt 39348041  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 34205262 - 34205207
Alignment:
Q  82 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    ||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  34205262 gatagcttatgaaaacaacttatagcttatataaaaataatttgactttactttat 34205207  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 49219162 - 49219107
Alignment:
Q  82 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||    
T  49219162 gatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttat 49219107  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 51630154 - 51630079
Alignment:
Q  63 tattttca-aaattctgcaggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    |||||||| ||||||| || ||||| ||||||||||| ||||||||||||||| ||| ||||| |||||| |||||    
T  51630154 tattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaactttattttat 51630079  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 11842237 - 11842197
Alignment:
Q  83 atagtttatgaaaataacttatagcttatatccaaataatt 123  Q
    |||||||||||||| ||||||||||||||||  ||||||||    
T  11842237 atagtttatgaaaacaacttatagcttatatgaaaataatt 11842197  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 49060556 - 49060506
Alignment:
Q  89 tatgaaaataacttatagcttatatccaaataatttgactttactttattt 139  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  49060556 tatgaaaataacttatagcttatataaaaataatttgactttattttattt 49060506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 24909681 - 24909634
Alignment:
Q  88 ttatgaaaataacttatagcttatatccaaataatttgactttacttt 135  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24909681 ttatgaaaacaacttatagcttatatgaaaataatttgactttacttt 24909634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 24895370 - 24895326
Alignment:
Q  91 tgaaaataacttatagcttatatccaaataatttgactttacttt 135  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||    
T  24895370 tgaaaacaacttatagcttatatgaaaataatttgactttacttt 24895326  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 21872315 - 21872373
Alignment:
Q  79 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    |||||||| ||||||||| ||||||||||||||||| ||| |||||||| ||| |||||    
T  21872315 caggatagcttatgaaaacaacttatagcttatatcaaaaaaatttgaccttattttat 21872373  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 24235731 - 24235779
Alignment:
Q  83 atagtttatgaaaataacttatagcttatatccaaataatttgacttta 131  Q
    |||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  24235731 atagcttatgaaaacaacttatagcttatattcaaatagtttgacttta 24235779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 37689432 - 37689486
Alignment:
Q  83 atagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    |||| |||||||||||  |||||||||||||  ||||||||| ||||||||||||    
T  37689432 atagcttatgaaaatagtttatagcttatatgaaaataatttaactttactttat 37689486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 53848109 - 53848158
Alignment:
Q  81 ggatagtttatgaaaataacttatagcttatatccaaataatttgacttta 131  Q
    |||||||||||||||||||| | ||||||||||| ||| ||||||||||||    
T  53848109 ggatagtttatgaaaataac-tgtagcttatatcaaaacaatttgacttta 53848158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 49504206 - 49504141
Alignment:
Q  218 tttggtgtatgcagggcttgttcaatggaaccagataagacaacaatgggctggaaataaaaggtc 283  Q
    |||| |||||||||| ||| |||  |||||||| | ||| |||||||||| |||||||||||||||    
T  49504206 tttgatgtatgcaggtcttcttctgtggaaccaaacaaggcaacaatgggttggaaataaaaggtc 49504141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 43141897 - 43141839
Alignment:
Q  79 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    |||||||| ||||||||| | ||||||||||||||  ||| ||||||||||||||||||    
T  43141897 caggatagcttatgaaaacatcttatagcttatatggaaacaatttgactttactttat 43141839  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 11513921 - 11513866
Alignment:
Q  82 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    ||||| ||||||||| ||||||||||||||||  ||| |||||||||||| |||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttat 11513866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 43199440 - 43199382
Alignment:
Q  79 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    |||||||||||||||||| |||||||||||||||   | ||||||| |||||| |||||    
T  43199440 caggatagtttatgaaaacaacttatagcttatacgaagataatttaactttattttat 43199382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 114
Target Start/End: Complemental strand, 20258514 - 20258486
Alignment:
Q  86 gtttatgaaaataacttatagcttatatc 114  Q
    |||||||||||||||||||||||||||||    
T  20258514 gtttatgaaaataacttatagcttatatc 20258486  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 4006738 - 4006682
Alignment:
Q  81 ggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    |||||| ||||||||| ||||||||||||||||  ||| |||||||||||| |||||    
T  4006738 ggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttat 4006682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 18264355 - 18264295
Alignment:
Q  79 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttattt 139  Q
    |||||||||||| ||||||| |||||| ||| |||  ||| ||||||||||||||||||||    
T  18264355 caggatagtttaagaaaatagcttataacttgtatgaaaacaatttgactttactttattt 18264295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 27595622 - 27595683
Alignment:
Q  90 atgaaaataacttatagcttatatccaaataatttgactttactttatttatcattatagaa 151  Q
    |||||| ||||||| |||||||||  |||||||||||||||| ||||| | | |||||||||    
T  27595622 atgaaattaacttacagcttatatgaaaataatttgactttattttatcttttattatagaa 27595683  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 2514728 - 2514656
Alignment:
Q  79 caggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttatttatcattatagaa 151  Q
    ||||| || ||||||||||||||||||||| ||||  || || |||||||||| ||||| | | |||||||||    
T  2514728 caggacagcttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaa 2514656  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 27599 - 27544
Alignment:
Q  82 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    ||||||||||||||| ||||||||| ||||||  ||| |||||||||||| |||||    
T  27599 gatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttat 27544  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 1470903 - 1470972
Alignment:
Q  82 gatagtttatgaaaataacttatagcttatatccaaataatttgactttactttatttatcattatagaa 151  Q
    ||||| ||||||||| | ||||||||||||||  || ||||||||||||| ||||| | | |||||||||    
T  1470903 gataggttatgaaaacagcttatagcttatatgaaagtaatttgactttattttatcttttattatagaa 1470972  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 34770917 - 34770860
Alignment:
Q  80 aggatagtttatgaaaataacttatagcttatatccaaataatttgactttactttat 137  Q
    ||||||| ||||||||| ||||||||||||| ||  ||| |||||||||||| |||||    
T  34770917 aggatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttat 34770860  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 29973106 - 29973050
Alignment:
Q  80 aggatagtttatgaaaataacttatagcttatatccaaataatttgactttacttta 136  Q
    ||||||| ||||||||| |||||||||||||| |  ||||| |||||||||| ||||    
T  29973106 aggatagcttatgaaaacaacttatagcttatgtgaaaatagtttgactttatttta 29973050  T

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