View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_high_1 (Length: 563)
Name: NF15176_high_1
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 14 - 547
Target Start/End: Original strand, 44829735 - 44830262
Alignment:
| Q |
14 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44829735 |
gcaaaggcacacagcagcttcaagattagcaagatcatcaatgagagagcagcatggtgtctttggtggcttaccaagttcaacattaatcaaacccaat |
44829834 |
T |
|
| Q |
114 |
acatcagcacacacaccaaacttaattgtgtctctaggacaagttgggtgtgggtgtttgtggctgtgatctttgtgaggtggtgggggacatggaacat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44829835 |
acatcagcacacacaccaaacttaattgtgtctctaggacaagttgggtgt------ttgtggctgtgatctttgtgaggtggtgggggacatggaacat |
44829928 |
T |
|
| Q |
214 |
atgttgagcttaccacagtgnnnnnnnggatgttgaggcaaaggagcatagcaaccttggaagccatttggaatgattgaggtgctaatactctttagtt |
313 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44829929 |
atgttgagcttaccacagtgaaaaataggatgttgaggcaaaggagcatagcaaccttggaagccatttggaatgattgaggtgctaatactctttagtt |
44830028 |
T |
|
| Q |
314 |
tgatttggtgtatgagtgagtgagtgatgatgtttgagaggaataagaggggtttttatagggaaaaggattggtgaatttgttgattaaaataactggt |
413 |
Q |
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| T |
44830029 |
tgatttggtgtatgagtgagtgagtgatgatgtttgagaggaataagagggggctttatagggaaaaggattggtgaatttgttgattaaaataactggt |
44830128 |
T |
|
| Q |
414 |
ttatttggaggcccatgtgagtaactgagtgagcctaaggcctcaagattgttcttattactctgtatttgtctcttacaactcaaatcccgttgtcaaa |
513 |
Q |
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| T |
44830129 |
ttatttggaggcccatgtgagtaactcagtgagcctaaggcctcaagattgttcttattactctgtatttgtctcttacaactcaaatcccgttgtcaaa |
44830228 |
T |
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| Q |
514 |
tatgtaagaaaattattaaatcatacgtaacatt |
547 |
Q |
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| T |
44830229 |
tatgtaagaaaattattaaatcatacgtaacatt |
44830262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 41820594 - 41820138
Alignment:
| Q |
14 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41820594 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
41820495 |
T |
|
| Q |
114 |
acatcagcacacacaccaaacttaattgtgtctctaggacaagttggg---------------------tgtgggtgtttgtggctgtgatctttgtgag |
192 |
Q |
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| T |
41820494 |
acatcagcacacacaccaaacttgattgtgtctctagggcatgttgggtttttggaggaaggtggatgatgagggtgtgagtggccgtgatctttgtgag |
41820395 |
T |
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| Q |
193 |
gtggtgggggacatggaacatatgttgagcttaccacagtgnnnnnnnggatgttgaggcaaaggagcatagcaaccttggaagccatttgga------- |
285 |
Q |
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| T |
41820394 |
gtggtgggggacatggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggcaaaggagcatagcaaccttggaagccatttggattaatga |
41820295 |
T |
|
| Q |
286 |
--atgattgaggtgctaatactctttagtttgatttggtgtatgagtgagtgagtgatgatgtttgagaggaataagaggggtttttatagggaaaagga |
383 |
Q |
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| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
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| T |
41820294 |
ttaagattaaggtgctaatactc-ttagtttgatttggtgt----gtgagtgagtgatgatgtttgaga-gaataagaggggattttataggg--aagga |
41820203 |
T |
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| Q |
384 |
ttggtgaatttgttgattaaaataactggtttatttggaggcccatgtgagtaactgagtgagcc |
448 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
41820202 |
ttggtgaatttgttgattataataactggtttatttggaggcccatgtgagttactgagggagcc |
41820138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 41818401 - 41818328
Alignment:
| Q |
451 |
aggcctcaagattgttcttattactctgtatttgtctcttacaactcaaatcccgttgtcaaatatgtaagaaa |
524 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41818401 |
aggcctcaagattgttcttattaccctgtatttgtctattacaactcaaatcccgttgtcaaatatgtaagaaa |
41818328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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