View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15176_high_17 (Length: 329)
Name: NF15176_high_17
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 15012890 - 15013191
Alignment:
| Q |
18 |
gtcatcacaactaaatcaacaaccttaaaattcaacaaccacttctcattcccattttcactcaaatgcagcagcatcacaacatctcaatcagaatcaa |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012890 |
gtcataacaactaaatcaacaaccttaaaattcaacaaccacttctcattcccattctcactcaaatgcagcagcatcacaacatctcaatcagaatcaa |
15012989 |
T |
|
| Q |
118 |
tcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| || |
|
|
| T |
15012990 |
tcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaggcaagttcgtttcaatac |
15013089 |
T |
|
| Q |
218 |
cccagataatcctgactcagtcatcaaattctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttca |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15013090 |
cccagataatcctgactcagtcatcaacttctttcaaaaccatggtttttcacactctgacatacgcatcatcatcaaaaaagcaccatggttactttca |
15013189 |
T |
|
| Q |
318 |
tc |
319 |
Q |
| |
|
|| |
|
|
| T |
15013190 |
tc |
15013191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 31968807 - 31969108
Alignment:
| Q |
18 |
gtcatcacaactaaatcaacaaccttaaaattcaacaaccacttctcattcccattttcactcaaatgcagcagcatcacaacatctcaatcagaatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31968807 |
gtcatcacaactaaatcaacaaccttaaaattcaacaaccacttctcattcccattttcactcaaatgcagcagcatcacaacatctcaatcagaatcaa |
31968906 |
T |
|
| Q |
118 |
tcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||| || |
|
|
| T |
31968907 |
tcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaagcaggttcgtttcaatac |
31969006 |
T |
|
| Q |
218 |
cccagataatcctgactcagtcatcaaattctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttca |
317 |
Q |
| |
|
| ||||||||||||| || || |||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
31969007 |
ctcagataatcctgattctgttatcaccttctttcaaaaccatggtttttcaaactctgacatacgcatcttcatcaaaaaagcaccatggttactttca |
31969106 |
T |
|
| Q |
318 |
tc |
319 |
Q |
| |
|
|| |
|
|
| T |
31969107 |
tc |
31969108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 15019383 - 15019683
Alignment:
| Q |
19 |
tcatcacaactaaatcaacaaccttaaaattcaacaaccacttctcattcccattttcactcaaatgcagcagcatcacaacatctcaatcagaatcaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15019383 |
tcatcacaactaaatcaacaaccttaaaattcaacaaccacttctcattcccactttcactcaaatgcagcagcatcacaacatctcaatcagaatcaat |
15019482 |
T |
|
| Q |
119 |
cacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||| ||| |
|
|
| T |
15019483 |
cacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaggcacgttcgtttcaatacc |
15019582 |
T |
|
| Q |
219 |
ccagataatcctgactcagtcatcaaattctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttcat |
318 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||| | |||| |||||| |||| |||| || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
15019583 |
ccagataggcctgactcagtcatcaacttcttaaaaagctatggcttttcaaactccaacattcgcatcatcatcaaaaaagcaccttggttactttcat |
15019682 |
T |
|
| Q |
319 |
c |
319 |
Q |
| |
|
| |
|
|
| T |
15019683 |
c |
15019683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 319
Target Start/End: Original strand, 14528438 - 14528709
Alignment:
| Q |
48 |
ttcaacaaccacttctcattcccattttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatctta |
147 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| | | | ||| ||||||||||||||| |||||| ||||||| || || |||| ||||||||| | |
|
|
| T |
14528438 |
ttcaaccaacacttctcattcccattttcactcacaagattctgcaccacaacatctcaatctgaatcagtcacacatccattcgctgcatcttatctca |
14528537 |
T |
|
| Q |
148 |
tcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagaccccagataatcctgactcagtcatcaaatt |
247 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||||||||||||||| || ||||||| ||||||| ||| ||||||| ||||| |||||||||| || |
|
|
| T |
14528538 |
tcaacaattttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcacctt |
14528637 |
T |
|
| Q |
248 |
ctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttcatc |
319 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||| ||||| |||| || ||||||||||||||||||||| |
|
|
| T |
14528638 |
ctttcaaaatcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccatggttactttcatc |
14528709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 319
Target Start/End: Original strand, 14542664 - 14542935
Alignment:
| Q |
48 |
ttcaacaaccacttctcattcccattttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatctta |
147 |
Q |
| |
|
|||||| | ||||||||||||| | ||||||||| | | | ||| ||||||||||||||| |||||| ||||||| || || |||| ||||||||| | |
|
|
| T |
14542664 |
ttcaaccaacacttctcattccaaatttcactcacaagattctgcaccacaacatctcaatctgaatcagtcacacatccattcgctgcatcttatctca |
14542763 |
T |
|
| Q |
148 |
tcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagaccccagataatcctgactcagtcatcaaatt |
247 |
Q |
| |
|
|||||||||||| |||||| |||||| |||||||||||||||||| || ||||||| ||||||| ||| ||||||| ||||| |||||||||| || |
|
|
| T |
14542764 |
tcaacaattttgggttctcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcacctt |
14542863 |
T |
|
| Q |
248 |
ctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttcatc |
319 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||| ||||| |||| || ||||||||||||||||||||| |
|
|
| T |
14542864 |
ctttcaaaatcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccatggttactttcatc |
14542935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 119 - 319
Target Start/End: Original strand, 14519899 - 14520099
Alignment:
| Q |
119 |
cacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagacc |
218 |
Q |
| |
|
||||||||| ||||||||||| || || ||||||| |||| ||||||| |||||| |||||||||||||||||| | | || ||| ||||||| ||| |
|
|
| T |
14519899 |
cacacaaccatttgctgtatcatacctcgtcaacaaatttggtttctcacatgaatcggctctcaaagctttcaacaacagacaggttcgtttcaatacc |
14519998 |
T |
|
| Q |
219 |
ccagataatcctgactcagtcatcaaattctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttcat |
318 |
Q |
| |
|
|||||||||||||| || || |||| ||||||||||||||||| ||||||||| | ||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
14519999 |
ccagataatcctgattctgttatcaccttctttcaaaaccatggcttttcacacgataacatacgcatcatcatcacaaaagcaccatggttactttcat |
14520098 |
T |
|
| Q |
319 |
c |
319 |
Q |
| |
|
| |
|
|
| T |
14520099 |
c |
14520099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 132 - 319
Target Start/End: Complemental strand, 15004439 - 15004252
Alignment:
| Q |
132 |
gctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagaccccagataatcctg |
231 |
Q |
| |
|
|||||||| || ||| |||||||||||| |||||||||||||||| ||||||||||||||||| | ||| ||| ||||||| |||||||||||||||| |
|
|
| T |
15004439 |
gctgtatcataccttgtcaacaattttggtttctcaactgaatcaactctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctg |
15004340 |
T |
|
| Q |
232 |
actcagtcatcaaattctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttcatc |
319 |
Q |
| |
|
| || || |||| ||||||||||| ||||||||||||| | | ||||||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
15004339 |
attctgttatcaccttctttcaaaatcatggtttttcactcgataacatacgcatcatcatcacaaaagcaccttggttactttcatc |
15004252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 107 - 319
Target Start/End: Original strand, 14512047 - 14512259
Alignment:
| Q |
107 |
atcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagtt |
206 |
Q |
| |
|
|||||||||| ||||||| || || |||| ||||||||| ||||||||||||| |||| || |||||||||||||||| ||||||||| | ||| ||| |
|
|
| T |
14512047 |
atcagaatcagtcacacatccattcgctgcatcttatctcatcaacaattttggtttcacacatgaatcagctctcaaatctttcaactacaagcatgtt |
14512146 |
T |
|
| Q |
207 |
agtttcaagaccccagataatcctgactcagtcatcaaattctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccat |
306 |
Q |
| |
|
||||||| ||| ||||||| ||||| |||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||| |||| || |||||||| |
|
|
| T |
14512147 |
cgtttcaataccgcagataaacctgattcagtcatcaccttctttcaaaatcatggcttttcacacgacaacatacgcatcatgatcagaagagcaccat |
14512246 |
T |
|
| Q |
307 |
ggttactttcatc |
319 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14512247 |
ggttactttcatc |
14512259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 108 - 319
Target Start/End: Original strand, 14533732 - 14533943
Alignment:
| Q |
108 |
tcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagtta |
207 |
Q |
| |
|
|||||||||| |||||| || || ||||||| || || ||||||||||||| |||||| |||||| |||||||||||||||||| | ||| ||| |
|
|
| T |
14533732 |
tcagaatcaaacacacatccattctctgtatcatacctcatcaacaattttggattctcacatgaatctgctctcaaagctttcaacaacaagcaggttc |
14533831 |
T |
|
| Q |
208 |
gtttcaagaccccagataatcctgactcagtcatcaaattctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatg |
307 |
Q |
| |
|
||||||| |||||||||||| |||| || || |||| ||||||||||||||||||||| || |||| ||||||| ||||||||| |||| ||||| || |
|
|
| T |
14533832 |
gtttcaataccccagataatgctgattctgttatcaccttctttcaaaaccatggttttccaaactccaacatacgcatcatcatccaaaaggcaccttg |
14533931 |
T |
|
| Q |
308 |
gttactttcatc |
319 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14533932 |
gttactttcatc |
14533943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 318
Target Start/End: Original strand, 14546895 - 14547081
Alignment:
| Q |
132 |
gctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagaccccagataatcctg |
231 |
Q |
| |
|
|||||||| || |||||||||||||| | ||||||| || ||| |||||||| ||||||||| | || ||| |||||| || |||| |||||| |
|
|
| T |
14546895 |
gctgtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttcttttcaaatccgcagaaaatccta |
14546994 |
T |
|
| Q |
232 |
actcagtcatcaaattctttcaaaaccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttcat |
318 |
Q |
| |
|
| ||||| ||||| ||||| |||| | || ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
14546995 |
attcagttatcaatttcttcaaaaatcgtgatttttcacactctgatatacgaatcatcattagaaaagcaccatggttactttcat |
14547081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 319
Target Start/End: Original strand, 15007519 - 15007781
Alignment:
| Q |
57 |
cacttctcattcccattttcactcaaatgcagcagcatcacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaatt |
156 |
Q |
| |
|
||||||||||||||| ||||||||| | | ||||| ||||||||| ||||||||| | ||| || || || |||| ||| || || ||| |||||| |
|
|
| T |
15007519 |
cacttctcattcccaatttcactcacaagattcagcaccacaacatcaacatcagaatccaacactcacccattcgctgcatcctacctcatcgacaatt |
15007618 |
T |
|
| Q |
157 |
ttgatttctcaactgaatcagctctcaaagctttcaacttcgggcaagttagtttcaagaccccagataatcctgactcagtcatcaaattctttcaaaa |
256 |
Q |
| |
|
||| ||||||| || |||| ||||| |||||||||||| | || ||| ||||||| |||| || || ||| | ||||| ||| ||||||||||| |
|
|
| T |
15007619 |
ttggtttctcacctcaatctgctcttaaagctttcaacaacaaacaggttcgtttcaatacccttgaaaagcctaattcagttctcaccttctttcaaaa |
15007718 |
T |
|
| Q |
257 |
ccatggtttttcacactctgacatacgaatcatcatcaaaaaagcaccatggttactttcatc |
319 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||| | ||||| |||||||||||||||||| |
|
|
| T |
15007719 |
tcatggcttttcacacgaaaacatacgcatcatcattagaaaagaaccatggttactttcatc |
15007781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 17357345 - 17357245
Alignment:
| Q |
95 |
cacaacatctcaatcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactg-aatcagctctcaaagctttcaa |
193 |
Q |
| |
|
||||||||| | ||||||| | |||||| ||| ||||||||||| ||||| ||| ||||||||| |||| | ||| |||| ||| ||||||||||||| |
|
|
| T |
17357345 |
cacaacatcagagtcagaattagtcacaccaccatttgctgtatcgtatctcatcgacaattttggtttcactcctgaaatctgctttcaaagctttcaa |
17357246 |
T |
|
| Q |
194 |
c |
194 |
Q |
| |
|
| |
|
|
| T |
17357245 |
c |
17357245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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