View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_high_18 (Length: 323)
Name: NF15176_high_18
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 28716284 - 28715987
Alignment:
| Q |
18 |
aaaaggacttagcagaagtgtcactacagctaaaattcacgcctaaatgagatacaaaacacacagatctcacctactcacaatccataaataaatgccc |
117 |
Q |
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| T |
28716284 |
aaaaggacttggcagaagtgtcactacagctaaaattcacgcctaaatgagatacaaaacacacagatctcacctactcacaatccataaataaatgccc |
28716185 |
T |
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| Q |
118 |
aacagtctcattacaaaaacaacaaagaggaatacactgaacacctcgattagaaagagccaatctaaccggagttcaatcatgtaggatacgcatgaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28716184 |
aacagtctcattacaaaaacaacaaagaggaatacaccgaacacctcgattagaaagagccaatctaaccggagttcaatcatgtaggatacgcatgaac |
28716085 |
T |
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| Q |
218 |
atgccttggtatagtcctcaatttccatagcttagaccagactttgctgtgctgtggcataatggattgattggattggtgcactgctttcctatgct |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28716084 |
atgccttggtatagtccccaatttccatagcttagaccagactttgctgtgctgtggcataatggattgattggattggtgcactgctttcctatgct |
28715987 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 10537749 - 10537792
Alignment:
| Q |
212 |
atgaacatgccttggtatagtcctcaatttccatagcttagacc |
255 |
Q |
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| T |
10537749 |
atgaacatgccttggtatagtccgcaatttccatagcttagacc |
10537792 |
T |
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