View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15176_high_19 (Length: 310)
Name: NF15176_high_19
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 24563359 - 24563658
Alignment:
| Q |
1 |
atgtctctgaagttcttttaggaacagcaacttcaacagtgtttgtactattttcaccactagtttcacatgttgaatctttaccacttcccatggataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24563359 |
atgtctctgaagttcttttaggaacagcaacttcaacagtgtttgtactattttcaccactagtttcacatgttgaatctttaccacttcccatggataa |
24563458 |
T |
|
| Q |
101 |
tgtcaaagactgcaaattactattactagccttctcttgatactcattggtgcatgttgtaaccatttggttttgcattggcatgagagtattgttattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24563459 |
tgtcaaagactgcaaattactattactagccttttcttgatactcattggtgcatgttgtaaccatttggttttgcattggcatgagagtattgttattt |
24563558 |
T |
|
| Q |
201 |
gtaaacagataatctgaatcattagattgaatttcgttcggtgtagcaagatctgaatgattttcagacttgcatacaccgagaaaatccgcaacctttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24563559 |
gtaaacagataatctgaatcattagattgaatttcgttcggtgtagcaagatctgagtgattttcagacttgcatacaccgagaaaatccgcaacctttg |
24563658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University