View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15176_high_21 (Length: 300)
Name: NF15176_high_21
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 2068717 - 2068479
Alignment:
| Q |
13 |
atactttcattaatgattagttttatatttaaaatatttactaacttcaatgaaaacttgttagattaagttttttaaatgattattgtctctttaataa |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2068717 |
atactttcattaatgattagttttttatttaaaatatttattaacttcaatgaaaacttgttagattaagttttttaaatgattattgtctctttaataa |
2068618 |
T |
|
| Q |
113 |
tgtcaacagccatttccacaagccaatagattctttnnnnnnnnnnnnnnnnnnnntcaattgcatctcttttcacgtccaagttttctatataaacaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2068617 |
tgtcaacagccatttccacaagccaatagattctttaaaaaaaaaatcataaaaaatcaattgcatctcttttcacctccaagttttctatataaacaag |
2068518 |
T |
|
| Q |
213 |
tattgaatgtacaattaatacatagcaaatacaaatagc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2068517 |
tattgaatgtacaattaatacatagcaaatacaaatagc |
2068479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 34678207 - 34678310
Alignment:
| Q |
42 |
taaaatatttactaacttcaatgaaaacttgttagattaagttttttaaatgattattgtctctttaataatgtcaacagccatttccacaagccaatag |
141 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||| |||||||||||| ||| ||||||||||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
34678207 |
taaaatatttattaactttaatgaaaactcgtttgattaagtttttgaaaagattattgtctctataatattgtcaatagccatttccacaagccaatag |
34678306 |
T |
|
| Q |
142 |
attc |
145 |
Q |
| |
|
|||| |
|
|
| T |
34678307 |
attc |
34678310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 34678340 - 34678415
Alignment:
| Q |
176 |
catctcttttcacgtccaagttttctatataaacaagtattgaatgtacaattaatacatagcaaatacaaatagc |
251 |
Q |
| |
|
||||||||||||| || || ||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
34678340 |
catctcttttcacctctaatttttctatataaacatgcattgaatgtacaattattacattgcaaatacaaatagc |
34678415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 34648918 - 34648977
Alignment:
| Q |
192 |
caagttttctatataaacaagtattgaatgtacaattaatacatagcaaatacaaatagc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||| |
|
|
| T |
34648918 |
caagttttctatataaacaagtattgaatgaacaattaatacattgcaaaaataaatagc |
34648977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 34648769 - 34648875
Alignment:
| Q |
42 |
taaaatatttactaacttcaatgaaaacttgttagattaagttttttaaatgattattgtctctttaataatgtcaacagccatttccacaagccaatag |
141 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||| || ||||||||| || |||||||| ||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
34648769 |
taaaatatttataaactttagtgaaaacatgtttgaataagtttttaaatacattattgtttctttgataatgtcaatgaccattttcacaagccaatag |
34648868 |
T |
|
| Q |
142 |
attcttt |
148 |
Q |
| |
|
||||||| |
|
|
| T |
34648869 |
attcttt |
34648875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 34685502 - 34685563
Alignment:
| Q |
174 |
tgcatctcttttcacgtccaagttttctatataaacaagtattgaatgtacaattaatacat |
235 |
Q |
| |
|
||||||||||| ||| | ||||| ||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
34685502 |
tgcatctctttacacctataagttgtctatataaacaagtattgaatgcaaaattattacat |
34685563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University