View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15176_high_22 (Length: 299)

Name: NF15176_high_22
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15176_high_22
NF15176_high_22
[»] chr4 (2 HSPs)
chr4 (11-282)||(39827859-39828129)
chr4 (196-245)||(2891883-2891932)
[»] chr5 (2 HSPs)
chr5 (155-246)||(39003586-39003676)
chr5 (155-246)||(18091085-18091176)
[»] chr8 (1 HSPs)
chr8 (188-236)||(9217647-9217695)
[»] chr1 (1 HSPs)
chr1 (155-246)||(11400661-11400751)
[»] chr7 (1 HSPs)
chr7 (189-246)||(12421716-12421773)
[»] chr2 (1 HSPs)
chr2 (110-179)||(8904539-8904608)
[»] chr3 (1 HSPs)
chr3 (44-80)||(34430725-34430761)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 39827859 - 39828129
Alignment:
Q  11 cacagattattggtaattgtttttcgcagttctttcgggacaatttccatcgggataaatagcgctgctggnnnnnnnnnctcaaacatcatatcaaatt 110  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||         ||||||||||||||||||||    
T  39827859 cacagattattggtaattgtttttcgcagtcctttcgagacaatttccatcgggataaatagcactgctggaaaaaaaa-ctcaaacatcatatcaaatt 39827957  T
Q  111 gttgggccgtgaggggaatctgaaggatcacccacattaggtaagaacaatcacataagtgagagagacgccagattttttacttaaaatcttaagacat 210  Q
    |||||   ||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| ||||||||||||||||||||| ||    
T  39827958 gttggattgtgaggggagtctgaaggatcacccacattaggtaagaataattacataactgagagagacgccagactttttacttaaaatcttaagatat 39828057  T
Q  211 taggtttatgcatcatctcacttataaaatattcaaaatcttgtatgtgagaggatggatggagtccaaaat 282  Q
    ||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39828058 taaatttatgcatcatctaacttataaaatattcaaaatcttgtatgtgagaggatggatggagtccaaaat 39828129  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 2891883 - 2891932
Alignment:
Q  196 aaaatcttaagacattaggtttatgcatcatctcacttataaaatattca 245  Q
    |||| |||||||||||||||||||| ||| ||| ||||||||| ||||||    
T  2891883 aaaaccttaagacattaggtttatggatcctcttacttataaagtattca 2891932  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 39003676 - 39003586
Alignment:
Q  155 gaacaatcacataagtgagagagacgccagattttttacttaaaatcttaagacattaggtttatgcatcatctcacttataaaatattcaa 246  Q
    ||||||||| |||||||||||| || ||| |||||  ||| |||||||||||||||||||||  ||  |||||||||||||| ||| |||||    
T  39003676 gaacaatcatataagtgagagaaacaccacatttta-actcaaaatcttaagacattaggttattgggtcatctcacttatataatgttcaa 39003586  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 18091176 - 18091085
Alignment:
Q  155 gaacaatcacataagtgagagagacgccagattttttacttaaaatcttaagacattaggtttatgcatcatctcacttataaaatattcaa 246  Q
    ||||||||| |||||||||||| || ||| |||||    | |||| ||||||| |||||||||||   ||||||||| ||||||||||||||    
T  18091176 gaacaatcatataagtgagagaaacaccacattttaatataaaaaccttaagatattaggtttataggtcatctcacatataaaatattcaa 18091085  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 9217695 - 9217647
Alignment:
Q  188 ttttacttaaaatcttaagacattaggtttatgcatcatctcacttata 236  Q
    ||||||| |||||||||||||||||| |||||| |||||||||| ||||    
T  9217695 ttttactcaaaatcttaagacattagatttatggatcatctcacgtata 9217647  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 11400751 - 11400661
Alignment:
Q  155 gaacaatcacataagtgagagagacgccagattttttacttaaaatcttaagacattaggtttatgcatcatctcacttataaaatattcaa 246  Q
    ||||||||| |||||||||||||| |||  | |||  ||| |||| |||||||||||| ||||||   |||||||||||||||||| |||||    
T  11400751 gaacaatcatataagtgagagagatgccgcacttta-actcaaaaccttaagacattaagtttatatgtcatctcacttataaaatgttcaa 11400661  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 12421716 - 12421773
Alignment:
Q  189 tttacttaaaatcttaagacattaggtttatgcatcatctcacttataaaatattcaa 246  Q
    |||| |||||||||||| | |||  ||||||| ||||||||| |||||||||||||||    
T  12421716 tttatttaaaatcttaaaatattgagtttatgaatcatctcagttataaaatattcaa 12421773  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 8904608 - 8904539
Alignment:
Q  110 tgttgggccgtgaggggaatctgaaggatcacccacattaggtaagaacaatcacataagtgagagagac 179  Q
    ||||||| || ||||||| ||||| ||| || |||||||||| |||| ||||  ||||||||||||||||    
T  8904608 tgttgggtcgcgaggggagtctgagggaccatccacattaggcaagagcaatagcataagtgagagagac 8904539  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 34430725 - 34430761
Alignment:
Q  44 ttcgggacaatttccatcgggataaatagcgctgctg 80  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  34430725 ttcgggacaatttccgtcgggataaatagcactgctg 34430761  T

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