View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_high_23 (Length: 286)
Name: NF15176_high_23
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 7963182 - 7962906
Alignment:
| Q |
1 |
acgaatcaataattatcatcgaaactcacacataagtgcaagattttaagtttcaatattatatgagaaaaaattcgattagagaagacacacttcatat |
100 |
Q |
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| T |
7963182 |
acgaatcaataattatcatcgaaactcatacacaagtgcaagattttaggtttcaatattatatgagaaaaaattagattagagaaaacacacttcatat |
7963083 |
T |
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| Q |
101 |
aaatttattgaggatttacggatgacttattcattattagattatgaacttaattcaatccaaatcaagaaaaatgtgtgtagaaggtccaaccatatat |
200 |
Q |
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| T |
7963082 |
aaatttattgaggatttacggatgacttattcattattagattatgaacttaattcaatccaaatcaagaaaaatgtgtgtagaaggtccaaccatatat |
7962983 |
T |
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| Q |
201 |
atcaatgtggcaattggtatgaatcgatacttcaatgctatacacccaccttaatttattccatggtatgatgatgt |
277 |
Q |
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| T |
7962982 |
atcaatgtggcaattggtatgaatcgatacttcaatgctgtacacccaccttaatttattccacggtatgatgatgt |
7962906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 33575225 - 33575316
Alignment:
| Q |
186 |
ggtccaaccatatatatcaatgtggcaattggtatgaatcgatacttcaatgctatacacccaccttaatttattccatggtatgatgatgt |
277 |
Q |
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||||||||||||| ||||||||| |||||||||||||||| | | || ||||| |||| ||||||||||||||| ||||||| ||||||| |
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| T |
33575225 |
ggtccaaccatatgtatcaatgttgcaattggtatgaatcaacatttgaatgcattacatccaccttaatttattttatggtatcatgatgt |
33575316 |
T |
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