View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15176_high_28 (Length: 222)
Name: NF15176_high_28
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 34973844 - 34974050
Alignment:
| Q |
1 |
cctgaattctttctaaaaacaaccatgttttcatttgttggaacaaatccacaacttgcaaatgttgaaactatagtaaaaagagaaaatgtgaacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34973844 |
cctgaattctttctaaaaacaaccatgttttcatttgttggaacaaatccacaacttgcaaatgttgaaactatagtaaaaacagaaaatgtgaacattt |
34973943 |
T |
|
| Q |
101 |
ttagacccttgtttttaagtatttgtttagcactaggaataattgcaaggtaaatagataccccaattacacctataatgtgaataattaaaaagtaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34973944 |
ttagacccttgtttttaagtatttgtttagcactaggaataattgcaaggtaaatagacaccccaattacacctataatgtgaataattaaaaagtaagc |
34974043 |
T |
|
| Q |
201 |
aaaaact |
207 |
Q |
| |
|
||||||| |
|
|
| T |
34974044 |
aaaaact |
34974050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 35034589 - 35034767
Alignment:
| Q |
1 |
cctgaattctttctaaaaacaaccatgttttcatttgttggaacaaatccacaacttgcaaatgttgaaactatagtaaaaagagaaaatgtgaacattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35034589 |
cctgaattctttctaaaaacaaccatgttttcatttgttggaataaatccacaacttgaaaatgttgaaactatagtaaaaagagaaaatgtgaacattt |
35034688 |
T |
|
| Q |
101 |
ttagacccttgtttttaagtatttgtttagcactaggaataattgcaaggtaaatagataccccaattacacctataat |
179 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
35034689 |
ttagacccttgttttctagtacttgtttagcactaggaatcattgcaaggtaaagagacaccccaaatacacctataat |
35034767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 34955433 - 34955610
Alignment:
| Q |
1 |
cctgaattctttctaaaaacaaccatgttttcatttgttggaacaaatccacaacttgcaaatgttgaaactatagtaaaaagagaaaatgtgaacattt |
100 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
34955433 |
cctgaattctttctaaaatcaatcatgttttcatttgttggaacaaaaccacaacttgaaaatgatgaaactatagtaaaaacagaaaatgtcaacattt |
34955532 |
T |
|
| Q |
101 |
ttagacccttgtttttaagtatttgtttagcactaggaataattgcaaggtaaatagataccccaattacacctataa |
178 |
Q |
| |
|
|||||||||||||||| |||| |||||| | |||||||||||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
34955533 |
ttagacccttgttttttagtagttgttttgtactaggaataattgtaaggtaaagagacaccccaattacacctataa |
34955610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35000510 - 35000601
Alignment:
| Q |
1 |
cctgaattctttctaaaaacaaccatgttttcatttgttggaacaaatccacaacttgcaaatgttgaaactatagtaaaaagagaaaatgt |
92 |
Q |
| |
|
||||||||||| | ||||| | |||||| ||||| ||||| ||| | ||||| ||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
35000510 |
cctgaattcttcttgaaaactatcatgttctcattggttggtacataaccacatgttgcaaatgttgaaactatggtaaataaagaaaatgt |
35000601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35046871 - 35046962
Alignment:
| Q |
1 |
cctgaattctttctaaaaacaaccatgttttcatttgttggaacaaatccacaacttgcaaatgttgaaactatagtaaaaagagaaaatgt |
92 |
Q |
| |
|
||||||||||| | ||||| | |||||| ||||| || || | | | |||||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
35046871 |
cctgaattcttcttgaaaaccatcatgttctcattggtagggatataaccacaacttgcaaatgttgaaactattgtaaataaagaaaatgt |
35046962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University