View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_high_29 (Length: 221)
Name: NF15176_high_29
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 6264074 - 6264259
Alignment:
| Q |
18 |
atgaaggcgagcaaagaatccaataagtggttgtttcgcaaaaggtatgatatagtgatataccttgaattactttaggtgtaggaaacttgaggaattg |
117 |
Q |
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| T |
6264074 |
atgaaggcgagcaaagaatccaataagtggttgtttcgcaaaaggtatgatatagtgatataccttgaattactttaggtgtaggaaacttgaggaattg |
6264173 |
T |
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| Q |
118 |
ttcaccatcagttctaaagatttctgataacactggtaaaggactaatttggctaagtatatctgttggtagcttaattcctcctt |
203 |
Q |
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| T |
6264174 |
ttcaccatcagttctaaagatttctgataacactggtaaaggactaatttggctaagtatatctgttggtagcttaattcctcctt |
6264259 |
T |
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Back To:
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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 42693829 - 42693950
Alignment:
| Q |
77 |
ataccttgaattactttaggtgtaggaaacttgaggaattgttcaccatcagttctaaagatttctgataacactggtaaaggactaatttggctaagta |
176 |
Q |
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| T |
42693829 |
ataccttgaagtactttaggtggtggatacttgaggaactgttcaccatcggttcgaaagatttctttgagaacaggtaacggacttatcttgctaagta |
42693928 |
T |
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| Q |
177 |
tatctgttggtagcttaattcc |
198 |
Q |
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| T |
42693929 |
catctgttggcagcttaattcc |
42693950 |
T |
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