View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_high_7 (Length: 428)
Name: NF15176_high_7
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 43100165 - 43099764
Alignment:
| Q |
1 |
attatcaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaatatatgagatcaccctataatttgaattaatgattaaaattttta |
100 |
Q |
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| T |
43100165 |
attattaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaatatatgagatcaccctataatttgaattaatgattaaaattttta |
43100066 |
T |
|
| Q |
101 |
gatataagatttttggtgttgatatatttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatgaaatagacactgaattct |
200 |
Q |
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| T |
43100065 |
gatataagatttttggtgtttatatatttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatgaaatagacactgaattct |
43099966 |
T |
|
| Q |
201 |
ttggtaccacgcaaaataagcctaatgcttcgatgtcaaatgtgtgctctagactcttaaattaatcaattacctcatttcatcagtcactaaaatccat |
300 |
Q |
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| T |
43099965 |
ttggtaccacgcaaaataagcctaatgcttcgatgtcaaatgtgtgcactagactcttaaattaatcaattacctcatttcatcagtcactaaaatccat |
43099866 |
T |
|
| Q |
301 |
tttgctatgacaaacaaatattgttcaattacaatacttcatccctacatactacatggacaagtcaatgaattagatttaaaatcctatgcacatgcaa |
400 |
Q |
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| T |
43099865 |
tttgctatgacaaacaaatattgttcaattacaatacttcatccctacatactacatggacaagtcaatgaattagatttaaaatcctatgcacatgcaa |
43099766 |
T |
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| Q |
401 |
aa |
402 |
Q |
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|| |
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| T |
43099765 |
aa |
43099764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 40870951 - 40871065
Alignment:
| Q |
110 |
tttttggtgttgatat--atttcatttggaaattgtagctttcaaacaaccaagactattcaggaaaccaagatgaaatagacactgaattctttggtac |
207 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||| |||| | ||||| ||| ||||||||||||| ||| ||| ||||||| |
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| T |
40870951 |
tttttggtgttgatattaatttcatttgggaattgtagctttcaaacatagaagatcacaaaggaacccatgatgaaatagacattgagttccttggtac |
40871050 |
T |
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| Q |
208 |
cacgcaaaataagcc |
222 |
Q |
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| T |
40871051 |
tacacaagataagcc |
40871065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 40870379 - 40870425
Alignment:
| Q |
9 |
caatctggctcgactctacatcaggtatatgaaatcaaatgtctcaa |
55 |
Q |
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| T |
40870379 |
caatctggcttgactctaccacaggtatatgaaatcaaatgtctcaa |
40870425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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