View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_10 (Length: 400)
Name: NF15176_low_10
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 24562968 - 24563209
Alignment:
| Q |
19 |
gcaactgcagtataaaagattttgatgtctctgcaacaacatttcaccaaaaaattcgactcagtcgtatttaaatgcaatataattatttgcagcgtaa |
118 |
Q |
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| T |
24562968 |
gcaactgcagtataaaagattttgatgtctctgcaacaagatttcaccaacaaatttgactcggtcgtatttaaatgcaatataattatttgcagcataa |
24563067 |
T |
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| Q |
119 |
ttgcgactgtaatttaaaaccatgcctaagaattattaattcgatgttttaagtttaccttggcggccttttctcgactgtccttcccgtctacagctgt |
218 |
Q |
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| T |
24563068 |
ttgcgactgtaatttaaaaccatgcctaagagttattaattcgatgttttaagtttaccttggcggccttttctcgactgaccttcccttctacagctgt |
24563167 |
T |
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| Q |
219 |
tatcccaaaggtgagcttcataccttccagtccatctatgtc |
260 |
Q |
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| T |
24563168 |
tatcccaaaggtgagcttcataccttccagtccatctatgtc |
24563209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 24563270 - 24563332
Alignment:
| Q |
320 |
gcatgcaagaattaaatagattaaaagacaaatagagtgtaaatatccctacttggttacacc |
382 |
Q |
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| T |
24563270 |
gcatgcaagaattaaatagattaaaagacaaatagagtgtaaatatccctactttgttacacc |
24563332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 41965229 - 41965316
Alignment:
| Q |
173 |
ttaccttggcggccttttctcgactgtccttcccgtctacagctgttatcccaaaggtgagcttcataccttccagtccatctatgtc |
260 |
Q |
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| T |
41965229 |
ttaccttgacgtccttttcttgactgaccttcccttctacaagtattatcccaaaggtgagcttcataccttccggtccatctatgtc |
41965316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 30619982 - 30620032
Alignment:
| Q |
208 |
tctacagctgttatcccaaaggtgagcttcataccttccagtccatctatg |
258 |
Q |
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|||||| || ||||||||||||||||||||||| || || ||||||||||| |
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| T |
30619982 |
tctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
30620032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 13683516 - 13683566
Alignment:
| Q |
208 |
tctacagctgttatcccaaaggtgagcttcataccttccagtccatctatg |
258 |
Q |
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| T |
13683516 |
tctacagctgttatcccatagatgggcttcatatcttcctgtccatctatg |
13683566 |
T |
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