View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_11 (Length: 397)
Name: NF15176_low_11
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 52035789 - 52036167
Alignment:
| Q |
1 |
cgggagagaacttattatctgtgaagcttctacaatattagtatttgtcaacaaaataattcgaagtaattgacannnnnnnataggtgttcttgcaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||| |
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| T |
52035789 |
cgggagagaacttattatctgtgaagcttctacaatattagtatttgtaaacaaaataattcgaagtaattgatatttttt-atacgtgttcttgcaagt |
52035887 |
T |
|
| Q |
101 |
tgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccattatttaaccgttttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52035888 |
tgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccatt---taaccgttttctg |
52035984 |
T |
|
| Q |
201 |
tgggaacaggggatgcctcaacattaggcaaggcaactactgttgttagtctgtttgagattctatacagcaagtaaacaataattgcgaatgctaatta |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52035985 |
tgggaacaggggatgcctcaacataaggcaaggcaactactgttgttagtctgtttgagattctatacaacaagtaaacaataattgcgaatgctaatta |
52036084 |
T |
|
| Q |
301 |
agttcacaacaacgagcaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttc |
383 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52036085 |
agttcacaacaacgaccaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttc |
52036167 |
T |
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