View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_14 (Length: 383)
Name: NF15176_low_14
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 63 - 364
Target Start/End: Original strand, 38891683 - 38891989
Alignment:
| Q |
63 |
caaaggtacaagagaaaagaaaagaaaaagttccatagaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatata-- |
160 |
Q |
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| T |
38891683 |
caaaggtacaagagaaaagaaaagaaaaaattccatacaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatatata |
38891782 |
T |
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| Q |
161 |
gtcccaaccttccttttcctttataatac---gtaatgtgagacttcttcaacatatatttttcaactaataccaacaatcttcatctccattgaaaatg |
257 |
Q |
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| T |
38891783 |
gtcccaacctcccttttcctttataatactaggtaatgtgagacttcttcaacatatatttttcaactaacaccaacaatcttcatctccattgaaaatg |
38891882 |
T |
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| Q |
258 |
gtacatatactgtcattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatg |
357 |
Q |
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| T |
38891883 |
gtacatatattgtcattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatg |
38891982 |
T |
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| Q |
358 |
aactttc |
364 |
Q |
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||||||| |
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| T |
38891983 |
aactttc |
38891989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 16388197 - 16388148
Alignment:
| Q |
305 |
tatcataatccaccataaagagtatattttacttgaagttaaaccactcca |
355 |
Q |
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| T |
16388197 |
tatcatactccaccataaagagtata-atcacttgaagttaaaccactcca |
16388148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 29392552 - 29392515
Alignment:
| Q |
312 |
atccaccataaagagtatattttacttgaagttaaacc |
349 |
Q |
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| T |
29392552 |
atccaccataaagggtatactttacttgaagttaaacc |
29392515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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