View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_17 (Length: 368)
Name: NF15176_low_17
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 42087457 - 42087090
Alignment:
| Q |
1 |
aagatgattatgataatttagcttctaagtttcagtgccttaaggaagagaaagagtctttgcaatcagaggtaagttggtactttggttcttgcaatta |
100 |
Q |
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| T |
42087457 |
aagatgaatatgataatttagcttctaagtttcagtgccttaaggaagagaaagagtctttgcaatcagaggtaagttagtactttggttcttgcaatta |
42087358 |
T |
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| Q |
101 |
tattgtaacataactagagttgtgtctcgataaacagcttaatttaaacgagttcagctattcgtgaactattcatgctcaactcgcaaaatattcggtt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087357 |
tattgtaacataactatagttgtgtctcgataaacagtttaatttaaacgagttcagctattcgtgaactattcatgctcaactcgcaaaatattcggtt |
42087258 |
T |
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| Q |
201 |
aagtttgtttatttatttactcaagcttcgtattaggctcgattaattaaatgagttgaacttaagcttacccgtgtgattannnnnnncctcgcaggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
42087257 |
aagtttgtttatttatttactcaagcttcgtattaggctcgattaattaaatgagttgaacttaagcttaaccgtgtgattttttttttcctcgcaggtt |
42087158 |
T |
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| Q |
301 |
cagaagctaaattatatggtggagacatctcatgatggaggaagggaagcaaaggaaaatagcacaga |
368 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087157 |
cagaagctaagttatatggtggaaacatctcatgatggaggaagggaagcaaaggaaaatagcacaga |
42087090 |
T |
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