View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15176_low_19 (Length: 330)
Name: NF15176_low_19
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_19 |
 | |
|
| [»] chr2 (16 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 15013497 - 15013168
Alignment:
| Q |
1 |
ttcctagttcgaatcaatctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagttataaacg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15013497 |
ttcctagttcgaagcaatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagttataaacg |
15013398 |
T |
|
| Q |
101 |
accttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctact |
200 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
15013397 |
accttgaatttagaattaagtaaacaatagtatccttgttggttttcaaaaacctatttaataattgaaaaagagggattatccgtttgtccaagctact |
15013298 |
T |
|
| Q |
201 |
ttgtaaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcg |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15013297 |
ttgtaaaatgtgagggtttgcagttaacaatggaacaatatcagataaagaagcaccgttggatataaaaaattgaaacttaggcaataaccttttgtgg |
15013198 |
T |
|
| Q |
301 |
ggttgtgatgaaagtaaccatggtgctttt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15013197 |
ggttgtgatgaaagtaaccatggtgctttt |
15013168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 31969417 - 31969085
Alignment:
| Q |
1 |
ttcctagttcgaatcaatctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagtta---taa |
97 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |
|
|
| T |
31969417 |
ttcctagttcgaagcaatctagcaatggcagaatcataaactccaaaatcaaccatcaaattgatattagcctctagaaggttaaggggataaacaataa |
31969318 |
T |
|
| Q |
98 |
acgaccttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagct |
197 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
31969317 |
acgaccttgaatgtcgaattaagtaaacaatagtatccttgttggttttcgaaaacctatttaacaattgaaaaagagggattattcgtttgtccaagct |
31969218 |
T |
|
| Q |
198 |
actttgtaaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttg |
297 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31969217 |
actttgtaaaatgtgagggtttgcagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttg |
31969118 |
T |
|
| Q |
298 |
tcgggttgtgatgaaagtaaccatggtgctttt |
330 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
31969117 |
tggggttgtgatgaaagtaaccatggtgctttt |
31969085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 14520394 - 14520076
Alignment:
| Q |
15 |
caatctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggag---ttataaacgaccttgaatgt |
111 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||| ||| |||| | |||||||| ||||| | |
|
|
| T |
14520394 |
caatctagcaatgttagaatcagaaactccaaattcaatcatcaaattgatattagcctctagaacatgatagggataaataataaacgatagtgaattt |
14520295 |
T |
|
| Q |
112 |
cgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgt |
211 |
Q |
| |
|
||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| | |
|
|
| T |
14520294 |
cgaattaagcaaacaatggtatccttgttggttttcgaaaacctatttaacaattgaaaaagagggattattcgtttctccaaactactttgtaaaattt |
14520195 |
T |
|
| Q |
212 |
gagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggttgtgatga |
311 |
Q |
| |
|
||| |||| |||||||| ||| ||||||||| |||||||||| ||||| | |||||||||||||| ||||||| | |||||| |||||||||||| |
|
|
| T |
14520194 |
taggatttgcagttaacaggcgaataatatcagaggaagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtggggttgtgatga |
14520095 |
T |
|
| Q |
312 |
aagtaaccatggtgctttt |
330 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14520094 |
aagtaaccatggtgctttt |
14520076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 15003958 - 15004275
Alignment:
| Q |
15 |
caatctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagtta---taaacgaccttgaatgt |
111 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||| |||| |||| | ||||||| ||||||| | |
|
|
| T |
15003958 |
caatctagcaatggtagaatcagaaacatcaaaatccaccatcaaattgatattagcctctagaaagtgatagggataaaaagtaaacgatcttgaatat |
15004057 |
T |
|
| Q |
112 |
cgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgt |
211 |
Q |
| |
|
||||||| | |||||| |||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
15004058 |
cgaattaagccaacaatggtatccttgttggttt-cgaaaacctatttaacaattcaaaaagagggattattcgattctccaagctactttgtaaaattc |
15004156 |
T |
|
| Q |
212 |
gagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggttgtgatga |
311 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| | |||||| | ||||| |||||| ||||| |
|
|
| T |
15004157 |
gagggtttgaagttaacaatgaaacaatatcagaggaagaagcacctttggatagaaaaaattgaaactttgacaataaacctttgtggggttgcgatga |
15004256 |
T |
|
| Q |
312 |
aagtaaccatggtgctttt |
330 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
15004257 |
aagtaaccaaggtgctttt |
15004275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 14534246 - 14533924
Alignment:
| Q |
4 |
ctagttcgaatcaatctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagttataaacgacc |
103 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | || |||||||||| ||||||||||||||||||| | | ||||||| | | |||| | |
|
|
| T |
14534246 |
ctagatcgaatcaatctagcaatgacagaatgaggaattccaaaatcagtcatcaaattgatattagccacaataaggtgataataaatagtaaatgtag |
14534147 |
T |
|
| Q |
104 |
ttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttg |
203 |
Q |
| |
|
| ||||| |||| | ||| ||| | |||| |||||||||| | ||||| ||||||||||||||||||| |||||| |||| |||||||||||| | |
|
|
| T |
14534146 |
tccaatgttttattaagcaaataatggcatccctgttggtttttaagcacctacttaataattgaaaaagagggattatttgtttctccaagctacttcg |
14534047 |
T |
|
| Q |
204 |
taaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggt |
303 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
14534046 |
taaaattcgagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatagaaaaaattgaaactttggcaataaccttttgtggggt |
14533947 |
T |
|
| Q |
304 |
tgtgatgaaagtaaccatggtgc |
326 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
14533946 |
tgtgatgaaagtaaccaaggtgc |
14533924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 15008076 - 15007758
Alignment:
| Q |
15 |
caatctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtga-agggg--agttataaacgaccttgaatgt |
111 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||| || |||||||||||||||||| | | ||||||| | ||| | | ||||||||| |||||||| |
|
|
| T |
15008076 |
caatttagcaatggtagaatcagaaactccaaaaccagttatcaaattgatattagccacaataaggtgatatgggctaataataaacgacattgaatgt |
15007977 |
T |
|
| Q |
112 |
cgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgt |
211 |
Q |
| |
|
|||| || | ||||||| |||||||||||||||| | |||||| |||| |||| ||||||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
15007976 |
cgaagtaagcaaacaatgatatccttgttggttttaaagaacctacttaacaattcaaaaagagggattattcgtttgcccaagctacttcgtaaaattg |
15007877 |
T |
|
| Q |
212 |
gagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggttgtgatga |
311 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| | |||||||||| ||||||| |||| ||| |||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
15007876 |
tagggtttgcagttaacaatgaaacaatatcagctgaagaagcacctttggatagaaaatattcaaactttggcaataacattttgtggggttgtgatga |
15007777 |
T |
|
| Q |
312 |
aagtaaccatggtgctttt |
330 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
15007776 |
aagtaaccatggttctttt |
15007758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 131 - 327
Target Start/End: Complemental strand, 14512441 - 14512239
Alignment:
| Q |
131 |
tatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgttt------gtccaagctactttgtaaaatgtgagggtttgtagt |
224 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||| ||||||||| |||||| |||| ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
14512441 |
tatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaagtccaagctacttcgtaaaattctagggtttgtagt |
14512342 |
T |
|
| Q |
225 |
taacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggttgtgatgaaagtaaccatggt |
324 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14512341 |
taacaatggaacaatatcagaggaagaagcagcattggatagaaaaaattgaaactttggcaaaaaccttttgtggggttgtgatgaaagtaaccatggt |
14512242 |
T |
|
| Q |
325 |
gct |
327 |
Q |
| |
|
||| |
|
|
| T |
14512241 |
gct |
14512239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 131 - 327
Target Start/End: Complemental strand, 14528891 - 14528689
Alignment:
| Q |
131 |
tatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaag------ctactttgtaaaatgtgagggtttgtagt |
224 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||| ||||||||| |||||| |||| |||||| |||||| ||||||| |||||||||||| |
|
|
| T |
14528891 |
tatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaagtccaggctacttcgtaaaattctagggtttgtagt |
14528792 |
T |
|
| Q |
225 |
taacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggttgtgatgaaagtaaccatggt |
324 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14528791 |
taacaatggaacaatatcagaggaagaagcagcattggatagaaaaaattgaaactttggcaaaaaccttttgtggggttgtgatgaaagtaaccatggt |
14528692 |
T |
|
| Q |
325 |
gct |
327 |
Q |
| |
|
||| |
|
|
| T |
14528691 |
gct |
14528689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 131 - 327
Target Start/End: Complemental strand, 14543117 - 14542915
Alignment:
| Q |
131 |
tatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaag------ctactttgtaaaatgtgagggtttgtagt |
224 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||| ||||||||| |||||| |||| |||||| |||||| ||||||| |||||||||||| |
|
|
| T |
14543117 |
tatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaagtccaggctacttcgtaaaattctagggtttgtagt |
14543018 |
T |
|
| Q |
225 |
taacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggttgtgatgaaagtaaccatggt |
324 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14543017 |
taacaatggaacaatatcagaggaagaagcagcattggatagaaaaaattgaaactttggcaaaaaccttttgtggggttgtgatgaaagtaaccatggt |
14542918 |
T |
|
| Q |
325 |
gct |
327 |
Q |
| |
|
||| |
|
|
| T |
14542917 |
gct |
14542915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 330
Target Start/End: Complemental strand, 15019986 - 15019660
Alignment:
| Q |
7 |
gttcgaatcaatctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagttata---aacgacc |
103 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| | | | | ||| | ||||| | || || | |
|
|
| T |
15019986 |
gttcgaagcaatctagcaatggtagaatcagaaaatccaaaatcaaccatcaaattgatattagacacaatacggtcatggggattagtagaaaatgcag |
15019887 |
T |
|
| Q |
104 |
ttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttg |
203 |
Q |
| |
|
| ||| |||||||| | ||||||| ||||||||||||||||| | ||||| ||||||||| ||||| ||| ||||||||| | |||||||||| ||| |
|
|
| T |
15019886 |
tccaatatcgaattaagcaaacaatgatatccttgttggttttcaagtacctacttaataattcaaaaaaagggattattcgtctctccaagctaccttg |
15019787 |
T |
|
| Q |
204 |
taaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggt |
303 |
Q |
| |
|
|||||| ||||| || |||||||||||||| ||||||||| || ||| | ||| |||| ||| ||||||||||| ||||||||| |||||| |||| |
|
|
| T |
15019786 |
taaaattctagggtgtgcagttaacaatggaataatatcagaggaataagaagcatcagatagaaagaattgaaactttggcaataacattttgtggggt |
15019687 |
T |
|
| Q |
304 |
tgtgatgaaagtaaccatggtgctttt |
330 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
15019686 |
tgtgatgaaagtaaccaaggtgctttt |
15019660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 15024013 - 15023743
Alignment:
| Q |
15 |
caatctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggag---ttataaacgaccttgaatgt |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||| | | ||||||| ||||| | ||| | | | |||||| |
|
|
| T |
15024013 |
caatctagcaatgacagaatcagaaactccaaaatcagaaatcagattgatactagccacaataaggtgatggggatgactagtaacccatttcgaatgt |
15023914 |
T |
|
| Q |
112 |
cgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgt |
211 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||||| | ||||| ||| |||| ||||||||| |||||||| || || |||||| |||||||||| | |
|
|
| T |
15023913 |
tgaattaagcaaacaatagtatccttgttagttttaaagaaccttgttagcaatttaaaaagagggattattcgattctcaaagctagtttgtaaaattt |
15023814 |
T |
|
| Q |
212 |
gagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaactta |
282 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| |||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
15023813 |
gagggtatgtagttaacaatgaaacaatatgagatgaagaagcacctttggatagaaaaaattcaaactta |
15023743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 282
Target Start/End: Complemental strand, 14552493 - 14552317
Alignment:
| Q |
106 |
gaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgta |
205 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||| ||||| | ||| | |||| |||| ||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
14552493 |
gaatgtcgaattaagcaaacaattgtatccttgttagttttaaagaacattcttaacaattcaaaaagagggattattcgtttgtccaggctactttgta |
14552394 |
T |
|
| Q |
206 |
aaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaactta |
282 |
Q |
| |
|
|||| |||||||||| ||||||||||| || ||||| |||| |||||||||| ||||||| |||| ||| ||||||| |
|
|
| T |
14552393 |
aaatttgagggtttgaagttaacaatgaaataatatgagatgaagaagcacctttggatagaaaatattcaaactta |
14552317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 14547373 - 14547059
Alignment:
| Q |
19 |
ctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagtta---taaacgaccttgaatgtcgaa |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||| | | ||||||| || | | | ||| | | |||||||||| |
|
|
| T |
14547373 |
ctagcaatgacagaatcagaaactccaaaatcagtcatcaaattgatattagcggcaacaaggtgataggaattaaaagtaacataagtcgaatgtcgaa |
14547274 |
T |
|
| Q |
116 |
ttatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgtgagg |
215 |
Q |
| |
|
|| | ||| ||| |||||||||||||||| | || ||| |||| |||||||||||||| || |||||||| |||||||||||| | ||||| |||| |
|
|
| T |
14547273 |
gtaagcaaagaatgacatccttgttggttttcaagaagctacttaacaattgaaaaagagggataattcgtttctccaagctacttcgcaaaattcgagg |
14547174 |
T |
|
| Q |
216 |
gtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggttgtgatgaaagt |
315 |
Q |
| |
|
|||| |||| |||| ||||||||||||| ||| |||||| ||||||| |||||||| |||||| ||||| | | |||| ||||||| |||||||| |
|
|
| T |
14547173 |
gttttctgttatgaatgaaacaatatcagatgaagtagcacctttggatagaaaaaattcaaacttgggcaaaattatattgtggggttgtaatgaaagt |
14547074 |
T |
|
| Q |
316 |
aaccatggtgctttt |
330 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14547073 |
aaccatggtgctttt |
14547059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 130 - 282
Target Start/End: Original strand, 14850532 - 14850684
Alignment:
| Q |
130 |
gtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgtgagggtttgtagttaaca |
229 |
Q |
| |
|
||||||||| ||| |||| | |||||| ||||||||| ||||||||| |||||||||||||| |||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
14850532 |
gtatccttgctggatttcaagaacctacttaataattcaaaaagagggattattcgtttgtctaagctatattgtaaaatttgagggtttgaagttaaca |
14850631 |
T |
|
| Q |
230 |
atggaacaatatcagataaagaagcaccattggatataaaaaattgaaactta |
282 |
Q |
| |
|
||| || ||||| ||| |||||||||| ||||||| |||| ||| ||||||| |
|
|
| T |
14850632 |
atgaaataatatgagaggaagaagcacctttggatagaaaatattcaaactta |
14850684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 279
Target Start/End: Complemental strand, 14567534 - 14567359
Alignment:
| Q |
104 |
ttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttg |
203 |
Q |
| |
|
||||||| ||||||| | ||| ||| |||| |||||||||||| | ||| || |||| |||| ||||||||| ||||||||||| ||||| ||| | || |
|
|
| T |
14567534 |
ttgaatgccgaattaagcaaataatgatatctttgttggttttcaagaacttacttaacaattcaaaaagagggattattcgtttctccaaactaatatg |
14567435 |
T |
|
| Q |
204 |
taaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaac |
279 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||| ||||| |||||||||| ||||||| |||||| |||||| |
|
|
| T |
14567434 |
caaaattatagggtttgaagttaacaatgaaacaatctcagaggaagaagcacctttggatagaaaaaagtgaaac |
14567359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 14850418 - 14850471
Alignment:
| Q |
19 |
ctagcaatgacagaatcacaaactccaaaatcaaccatcaaattgatattagcc |
72 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
14850418 |
ctagcaatgacattatcagaaactccaaaatcagtcatcaaattgatattagcc |
14850471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 17357027 - 17357144
Alignment:
| Q |
213 |
agggtttgtagttaacaatggaacaatatcagataaagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtcgggttgtgatgaa |
312 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||| ||| |||||| ||||||| |||||||| |||||| ||||| | | |||| || |||| ||||| |
|
|
| T |
17357027 |
agggtttgcagttacgaatgaaacaatatcagatgaagtagcacctttggatagaaaaaattcaaactttggcaaaattatattgtgggattgtaatgaa |
17357126 |
T |
|
| Q |
313 |
agtaaccatggtgctttt |
330 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
17357127 |
acaaaccatggtgctttt |
17357144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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