View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_2 (Length: 535)
Name: NF15176_low_2
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 520
Target Start/End: Complemental strand, 27160714 - 27160210
Alignment:
| Q |
16 |
atccaaaagcagaagacaaagacaccaaagatgaagtagcagaacaacctcttgattcagctatttgtcccaaattgttgagaaacaccaaaccaatagt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27160714 |
atccaaaagcagaagacaaagacaccaaagatgaagtagcagaacaacctcttgattcagctatttgtcccaaattgttaagaaacaccaaaccaatagt |
27160615 |
T |
|
| Q |
116 |
tgcaccnnnnnnntatacaaagaaatataaccagaaatttattcttcttaacattaacttcactccaatttcttccataacaccaatctcttgaatttca |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27160614 |
tgcaccaaaaaaatatacaaagaaatataaccagaaatttattcttctcaacattaacttcactcctatttcttccataacaccaatctcttgaatttca |
27160515 |
T |
|
| Q |
216 |
caactatcttcaccctctttcacttcattctctattctttcttcactaatattctcctccatggtaaaatggtagattcttaacctttctcttttcttgt |
315 |
Q |
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|||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
27160514 |
caactatcttcaccctcttttgcttcattctctatcctctcttcactaatattctcctccatggtgaaatggtagattcttaacctttctcttttcctgt |
27160415 |
T |
|
| Q |
316 |
gccatgattctaatagttccttgaccttgagggaaattgggagtaaaagaggtaagagaagagaaactagaataccaataagcacaccaagtgaggatat |
415 |
Q |
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| T |
27160414 |
gccatgattctaatagttccttgatcttgagggaaattgggagtaaaagaggtaagagaagagaaactagaataccaataagcacaccaagtgaggatat |
27160315 |
T |
|
| Q |
416 |
tttgtttgtgaaatattgcaagctactcatcacagcatatattccagttgcaattgtaataacaaacataatagcaaaacaaacactagaatgtttaggg |
515 |
Q |
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| T |
27160314 |
tttgtttgtgaaatattgcaagctactcatcacagcatatataccagttgcaattgtaataacaaacataatagcaaaacaaacactagaatgtttaggg |
27160215 |
T |
|
| Q |
516 |
ttttt |
520 |
Q |
| |
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||||| |
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| T |
27160214 |
ttttt |
27160210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 520
Target Start/End: Complemental strand, 27145284 - 27144777
Alignment:
| Q |
16 |
atccaaaagcagaagacaaagacaccaaagatgaagtagcagaacaacctcttgattcagctatttgtcccaaattgttgagaaacaccaaaccaatagt |
115 |
Q |
| |
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|||| |||| ||| |||| |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| || |||||||| || |
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| T |
27145284 |
atccgaaagaagacgacagagacaccaaagatgaagtagcaaggcagcctctggattcagctatttgtcccaaattgttaagaaatactaaaccaattgt |
27145185 |
T |
|
| Q |
116 |
tgcaccnnnnnnntatacaaagaaatataaccagaaatttattcttcttaacattaacttcactccaatttcttccataacaccaatctcttgaatttca |
215 |
Q |
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|||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||| |||| |
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| T |
27145184 |
tgcaccaaaaaaatagacaaagaaatataaccagaaatttattcttctcaacattaacttcactcctatttcttccataacaccaaccacttgaaattca |
27145085 |
T |
|
| Q |
216 |
caactatcttcaccctctttcacttcattctctattctttcttcactaat----attctcctccatggtaaaatggtagattcttaacctttctcttttc |
311 |
Q |
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| ||| |||||||| ||||| || ||||||||| | ||| ||||| |||| |||||||||||||||||||| ||||| |||||||||||| ||||| |
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| T |
27145084 |
ccactgtcttcaccatcttttacctcattctctgtccttccttca-taatttgtattctcctccatggtaaaattgtagactcttaacctttcacttttt |
27144986 |
T |
|
| Q |
312 |
ttgtgccatgattctaatagttccttgaccttgagggaaattgggagtaaaagaggtaagagaagagaaactagaataccaataagcacaccaagtgagg |
411 |
Q |
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||||||||||| || | ||||||||||| ||| | |||||||| || || ||||||||||||| || |||| ||| ||||||| ||||||||||| | |
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| T |
27144985 |
ttgtgccatgaatcaagtagttccttgatcttcacagaaattggaagcaatagaggtaagagaatggatactataatgccaataaagacaccaagtgatg |
27144886 |
T |
|
| Q |
412 |
atattttgtttgtgaaatattgcaagctactcatcacagcatatattccagttgcaattgtaataacaaacataatagcaaaacaaacactagaatgttt |
511 |
Q |
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||| ||| || |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| || |
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| T |
27144885 |
atactttattagtgaaaaattgcaagctactaatcacagcatatattccagtggcaattgtaataacaaacatcaaagcaaaacaaacactagaatgctt |
27144786 |
T |
|
| Q |
512 |
agggttttt |
520 |
Q |
| |
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||| ||||| |
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|
| T |
27144785 |
aggattttt |
27144777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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