View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_23 (Length: 304)
Name: NF15176_low_23
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 30088411 - 30088684
Alignment:
| Q |
18 |
ggatgtatcgtccaattcactctccggcgagattcctgaaactctttgcactaagggaaatctcaccaagcttatacttttcaacaatgccttcaagggt |
117 |
Q |
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| T |
30088411 |
ggatgtatcgtccaattcactctccggcgagattcctgaaactctttgcactaagggaaatctcaccaagcttatacttttcaacaatgccttcaagggt |
30088510 |
T |
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| Q |
118 |
ccgattccaacaagcctatccaaatgtccttcactcgttcgtgttcggattcaaaacaattttctttctggtacaattcctgttggttttggtaagcttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30088511 |
ccgattccaacaagcctatccaaatgtccttcactcgttcgtgttcggattcaaaacaattttttttctggtacaattcctgttggttttggtaagcttg |
30088610 |
T |
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| Q |
218 |
agaagcttcagaggctagaattggctaacaatagtctcactggtggaattcctgaggacattgcttcttccaca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30088611 |
agaagcttcagaggctagaattggctaacaatagtctcactggtggaattcctgaggacattgcttcttccaca |
30088684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 39469540 - 39469269
Alignment:
| Q |
18 |
ggatgtatcgtccaattcactctccggcgagattcctgaaactctttgcactaagggaaatctcaccaagcttatacttttcaacaatgccttcaagggt |
117 |
Q |
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||||||||| |||||||||||||| || |||||||| ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||| |
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| T |
39469540 |
ggatgtatcatccaattcactctctggagagattccagaaactctttgcagcaagggcaatcttaccaagctaatacttttcaacaatgctttctctggt |
39469441 |
T |
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| Q |
118 |
ccgattccaacaagcctatccaaatgtccttcactcgttcgtgttcggattcaaaacaattttctttctggtacaattcctgttggttttggtaagcttg |
217 |
Q |
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|| |||||| |||||||||| | ||| |||| || ||||||||||| ||||| ||||||||||||||||| | | ||||||||||| |||| ||||||| |
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| T |
39469440 |
ccaattccatcaagcctatcaatgtgttcttctcttgttcgtgttcgaattcacaacaattttctttctggaaaagttcctgttggtcttggcaagcttg |
39469341 |
T |
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| Q |
218 |
agaagcttcagaggctagaattggctaacaatagtctcactggtggaattcctgaggacattgcttcttcca |
289 |
Q |
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|||||||||| ||| ||||||| || ||||||||||||||||||| |||||| || || ||| ||||||||| |
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| T |
39469340 |
agaagcttcaaaggttagaattagcaaacaatagtctcactggtgaaattccagatgatattccttcttcca |
39469269 |
T |
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