View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_3 (Length: 529)
Name: NF15176_low_3
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 28221852 - 28222340
Alignment:
| Q |
1 |
acaaatactaaaaggatgaaaaatgaaatacttaaaaacttgaggtgttacaaatatagttaacgtaaaagcaagtgataatgttttattgcaagattac |
100 |
Q |
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| T |
28221852 |
acaaatactaaaaggatgaaaaatgaaatactaaaaaacttgaggtgttacaaatatagttaacgtaaaagcaagtgataatgttttattgcaagattac |
28221951 |
T |
|
| Q |
101 |
ttaatatgattttggaatcaaggtggactatatatcgtacttacaatgagtataatattaaaactaggatttaatatctgatttaagtcatgctctggga |
200 |
Q |
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| T |
28221952 |
ttaatatgattttggaatcaaggtgaactatatatcgtacttgcaatgagtataatattaaaactaggatttaatatctgatttaagttatgctctggga |
28222051 |
T |
|
| Q |
201 |
atgatcctatgagtgttacttatagccttttagaccttctc-tatggcgacttactccctaagttacctataataaggaaaacgcatagattactttatt |
299 |
Q |
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| T |
28222052 |
atgatcctatgagtgttactta-agttttttggaccttctcttctggcgacttactccctaagttacctataatagggaaaatgcataaattactttatt |
28222150 |
T |
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| Q |
300 |
agccgattattttgacagaatatttcgtctaaatgctcgactgatcgggcctgatggttttgggggataagtaagggaggatgccctcacgggcgtaggc |
399 |
Q |
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|||||||||||||||| |||||||| ||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
28222151 |
agccgattattttgaccgaatattttgtctaaaggttcgactgctcgggcctgatggttttggtggataagtaagggaggatgccctcacgggcctaggc |
28222250 |
T |
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| Q |
400 |
ggcttgtctagggctaattggataatgagattagttcccacatttatctatatggtcaattatttaagatacgtgtccaaaaagtgagtg |
489 |
Q |
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| T |
28222251 |
ggcttgtctagggctaattggataatgagatcagttcccacatttatctatatggtcaattatttaagatacgtgtccaaaaagtgagtg |
28222340 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 274
Target Start/End: Original strand, 31947717 - 31947745
Alignment:
| Q |
246 |
gcgacttactccctaagttacctataata |
274 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31947717 |
gcgacttactccctaagttacctataata |
31947745 |
T |
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