View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15176_low_30 (Length: 237)

Name: NF15176_low_30
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15176_low_30
NF15176_low_30
[»] chr8 (8 HSPs)
chr8 (2-204)||(29357981-29358184)
chr8 (152-203)||(4298888-4298939)
chr8 (203-237)||(29357890-29357924)
chr8 (152-201)||(15816131-15816180)
chr8 (152-201)||(22651984-22652033)
chr8 (152-204)||(11927088-11927140)
chr8 (153-201)||(31236580-31236628)
chr8 (152-204)||(33405386-33405438)
[»] chr7 (7 HSPs)
chr7 (152-202)||(38143230-38143280)
chr7 (152-201)||(3721101-3721150)
chr7 (145-201)||(15902830-15902886)
chr7 (152-201)||(11061078-11061127)
chr7 (152-201)||(19206058-19206107)
chr7 (152-201)||(24146824-24146873)
chr7 (152-201)||(42720892-42720941)
[»] chr6 (5 HSPs)
chr6 (152-201)||(33001291-33001340)
chr6 (159-201)||(21424811-21424853)
chr6 (152-201)||(7086803-7086852)
chr6 (152-201)||(9617442-9617491)
chr6 (152-200)||(9629392-9629440)
[»] chr1 (4 HSPs)
chr1 (157-201)||(16164322-16164366)
chr1 (151-203)||(33230731-33230783)
chr1 (93-201)||(34712324-34712434)
chr1 (151-203)||(1864881-1864933)
[»] chr5 (3 HSPs)
chr5 (151-201)||(23012409-23012459)
chr5 (152-201)||(22423814-22423863)
chr5 (145-201)||(38749558-38749614)
[»] chr4 (4 HSPs)
chr4 (157-203)||(44081584-44081630)
chr4 (152-201)||(7214524-7214573)
chr4 (152-201)||(33950144-33950193)
chr4 (152-201)||(56110814-56110863)
[»] chr3 (3 HSPs)
chr3 (152-202)||(39756243-39756293)
chr3 (152-201)||(7928458-7928507)
chr3 (151-203)||(24633402-24633454)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 29358184 - 29357981
Alignment:
Q  2 catcattatcagcctgcaattattaaagcaaatatgaattatataggatagtctacattttccacctcctttaattcaattaattaacttttatgaagca 101  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29358184 catctttatccgcctgcaattattaaagcaaatatgaattatataggatagtctacattttccacctcctttacttcaattaattaacttttatgaagca 29358085  T
Q  102 cgaacactctttgaattagccatgttccagtatcggccacgtgcgacagaacaccgacacatataaatatattaaattatgtgagtttttc-aaattatt 200  Q
    || |||||| || ||||||||||||  |||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  29358084 cggacactccttcaattagccatgtctcagtgtcggacatgtgcgacaggacaccgacacatataaatacattaaattatgtgagtttttcaaaattatt 29357985  T
Q  201 aaca 204  Q
    ||||    
T  29357984 aaca 29357981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 4298888 - 4298939
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaac 203  Q
    |||||||||| | ||| || |||||||||||||| |||||||||||||||||    
T  4298888 acaccgacacttgtaattacattaaattatgtgattttttcaaattattaac 4298939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 29357924 - 29357890
Alignment:
Q  203 cataaattaacttacataccgtccaataaataaac 237  Q
    |||| ||||||||||||||||||||||||||||||    
T  29357924 catagattaacttacataccgtccaataaataaac 29357890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 15816131 - 15816180
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||| ||||| || | |||||||||||| |||||||||||||||    
T  15816131 acaccgacacttataattacactaaattatgtgattttttcaaattatta 15816180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 22652033 - 22651984
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||| | ||| |||||| |||||||||| |||||||||||||||    
T  22652033 acaccgacacttgtaattatattgaattatgtgattttttcaaattatta 22651984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 11927088 - 11927140
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaaca 204  Q
    |||||||||||||||| || | | |||||||||| ||| ||||||||||||||    
T  11927088 acaccgacacatataattacactgaattatgtgattttatcaaattattaaca 11927140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  153 caccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    ||||||||||||||| || ||| |||||||||| ||| |||||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 33405386 - 33405438
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaaca 204  Q
    |||||||||||||||| || | |||||||||||  ||| ||||||||||||||    
T  33405386 acaccgacacatataattacactaaattatgtgtttttctcaaattattaaca 33405438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 38143280 - 38143230
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaa 202  Q
    ||||| |||||||||| || |||||||||||||| ||||||||||||||||    
T  38143280 acaccaacacatataattacattaaattatgtgattttttcaaattattaa 38143230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 3721150 - 3721101
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| |||| |||||||||||| ||| |||||||||||    
T  3721150 acaccgacacatataattatactaaattatgtgattttctcaaattatta 3721101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 15902886 - 15902830
Alignment:
Q  145 cgacagaacaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    ||||| ||||||||||||||||| || | |||||||||||| ||| |||||||||||    
T  15902886 cgacacaacaccgacacatataattacactaaattatgtgattttatcaaattatta 15902830  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 11061078 - 11061127
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||| | ||| |||| |||||||||||| |||||||||||||||    
T  11061078 acaccgacacttgtaattatactaaattatgtgattttttcaaattatta 11061127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 19206107 - 19206058
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| |||| | |||||||||| ||| |||||||||||    
T  19206107 acaccgacacatataattataatgaattatgtgattttctcaaattatta 19206058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 24146873 - 24146824
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| |||||| |||||||||| ||| | |||||||||    
T  24146873 acaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 42720892 - 42720941
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||| ||||||||||| || ||| |||||||||| |||||||||||||||    
T  42720892 acactgacacatataattacatttaattatgtgattttttcaaattatta 42720941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 33001291 - 33001340
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| || ||| |||||||||| |||||||||||||||    
T  33001291 acaccgacacatataattacatttaattatgtgattttttcaaattatta 33001340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 21424811 - 21424853
Alignment:
Q  159 cacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| | |||||||| |||||||||||||||    
T  21424811 cacatataaatatattgacttatgtgattttttcaaattatta 21424853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 7086852 - 7086803
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| || | |||||||||||| ||| |||||||||||    
T  7086852 acaccgacacatataattacactaaattatgtgattttctcaaattatta 7086803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 9617491 - 9617442
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| || ||| |||||||||| ||| |||||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatt 200  Q
    |||||||||||||||| || ||| |||||||||| ||| ||||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 16164322 - 16164366
Alignment:
Q  157 gacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    ||||||||||| || |||||||||||||| |||||||||||||||    
T  16164322 gacacatataattacattaaattatgtgattttttcaaattatta 16164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 33230783 - 33230731
Alignment:
Q  151 aacaccgacacatataaatatattaaattatgtgagtttttcaaattattaac 203  Q
    ||||||||||||||||  || |||||||||||| | |||||||||||||||||    
T  33230783 aacaccgacacatatatttacattaaattatgtaaatttttcaaattattaac 33230731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 34712324 - 34712434
Alignment:
Q  93 tatgaagcacgaacactctttgaattagccatgttccagtatcggccacgtg--cgacagaacaccgacacatataaatatattaaattatgtgagtttt 190  Q
    ||||||||||| |||||| ||||||||| | ||| ||||| | || ||||||  |||||  |||| ||||||||||| || | |||||||||| | |||     
T  34712324 tatgaagcacggacactccttgaattagacgtgtcccagtgtaggacacgtgtccgacacgacactgacacatataattacactaaattatgttattttc 34712423  T
Q  191 tcaaattatta 201  Q
    |||||||||||    
T  34712424 tcaaattatta 34712434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 1864881 - 1864933
Alignment:
Q  151 aacaccgacacatataaatatattaaattatgtgagtttttcaaattattaac 203  Q
    ||||||||||||||||| || | | |||||||||| ||| |||||||||||||    
T  1864881 aacaccgacacatataattacactgaattatgtgattttctcaaattattaac 1864933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 23012409 - 23012459
Alignment:
Q  151 aacaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    ||||||||||||||||| || |||||||||| ||| ||| |||||||||||    
T  23012409 aacaccgacacatataattacattaaattatatgattttctcaaattatta 23012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 22423814 - 22423863
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    ||||||||| |||||| |||||| |||||||||| ||| |||||||||||    
T  22423814 acaccgacatatataattatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 38749558 - 38749614
Alignment:
Q  145 cgacagaacaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    ||||| |||||| |||||||||| || ||| |||||||| | |||||||||||||||    
T  38749558 cgacacaacaccaacacatataattacattgaattatgtcattttttcaaattatta 38749614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 44081584 - 44081630
Alignment:
Q  157 gacacatataaatatattaaattatgtgagtttttcaaattattaac 203  Q
    ||||||||||| || |||||||||| ||| |||||||||||||||||    
T  44081584 gacacatataattacattaaattatatgattttttcaaattattaac 44081630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 7214524 - 7214573
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||| ||||||| || |||||||||||||| ||| |||||||||||    
T  7214524 acaccgacgcatataattacattaaattatgtgattttctcaaattatta 7214573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 33950193 - 33950144
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||| | || |||||||||||||| ||| |||||||||||    
T  33950193 acaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 56110863 - 56110814
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| |||||| ||||||||||  ||| ||||||||||    
T  56110863 acaccgacacatataattatattgaattatgtgatgtttacaaattatta 56110814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 39756293 - 39756243
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattattaa 202  Q
    |||||||||| | ||| ||||||||||||||||| ||||| ||||||||||    
T  39756293 acaccgacacttgtaattatattaaattatgtgatttttttaaattattaa 39756243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 7928507 - 7928458
Alignment:
Q  152 acaccgacacatataaatatattaaattatgtgagtttttcaaattatta 201  Q
    |||||||||||||||| || | | |||||||||| |||||||||||||||    
T  7928507 acaccgacacatataattacactgaattatgtgattttttcaaattatta 7928458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 24633402 - 24633454
Alignment:
Q  151 aacaccgacacatataaatatattaaattatgtgagtttttcaaattattaac 203  Q
    ||||||||||||||||| || ||| ||||| |||| |||| ||||||||||||    
T  24633402 aacaccgacacatataattacattgaattacgtgatttttccaaattattaac 24633454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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