View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_4 (Length: 505)
Name: NF15176_low_4
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 31951688 - 31952175
Alignment:
| Q |
1 |
tagagtggttttgctcctttagctgcctttttgttcagcatatgtgagttctgaagttgcgcccactacccagtgttgtggtgtagcaggggtagccttt |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951688 |
tagagtggttttgctcctttagctgccattttgttcagcatatgtgagttctgaagttgcgcccactacccagtgttgtggtgtagcaggggtagccttt |
31951787 |
T |
|
| Q |
101 |
gatctgatgtgtggtggttctgtgatagttgttttcgtagttgagggtatgtacataattctaatttgaatcccccgttcaatttcaatatattctttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| | |
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|
| T |
31951788 |
gatctgatgtgtggtggttctgtgatagttgttttcgtagttgagggtatg-----aattctaacttgaatcccccattcaatttcaatatattcttttt |
31951882 |
T |
|
| Q |
201 |
aaattattatttacattcattattatcttaaccatatttataattgattccaattgaacaacactaagatctgtgaagccttattttacccacatattgt |
300 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
31951883 |
acattattatttacattcattattatcttaaccatatttataattgattccaattgaacgacactaagatctatgaagccttattttacccacatattgt |
31951982 |
T |
|
| Q |
301 |
gttaagttgttcaaatttattaaacatttatgtctaaacctgtgttttttcactggcaatatgatatannnnnnnaatatgcattttatccttgattctt |
400 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31951983 |
gttaagctgttcaaatttgttaaacatttatgtctaaacctgtgttttttcactggcaatatgatatatttttttaatatgcattttatccttgattctt |
31952082 |
T |
|
| Q |
401 |
gcctactatttttgttgcctttattattaatgttgtcactgcctacatattcttctatgaccaacttgtgtaatataatattttctacatatt |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31952083 |
gcctactatttttgttgcctttattattaatgttgtcactgcctacaaattcttctatgaccaacttgtgtaatataatattttctacatatt |
31952175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 3 - 493
Target Start/End: Complemental strand, 31950910 - 31950420
Alignment:
| Q |
3 |
gagtggttttgctcctttagctgcctttttgttcagcatatgtgagttctgaagttgcgcccactacccagtgttgtggtgtagcaggggtagcctttga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | ||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
31950910 |
gagtggttttgctcctttagctgcctttttgttcagtatatgtgagttttgaagctgcactcactaccaagtgttgtggtgtagtaggggtagcctttga |
31950811 |
T |
|
| Q |
103 |
tctgatgtgtggtggttctgtgatagttgttttcgtagttgagggtatgtacataattctaatttgaatcccccgttcaatttcaatatattctttgtaa |
202 |
Q |
| |
|
|| || |||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| | |||| |
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| T |
31950810 |
tccgacatgtggttgttctgtgatagtttttgtcgtagttgagggtatgtacataattctaacttgaatcccctcttcaatttcattatattttgtgtac |
31950711 |
T |
|
| Q |
203 |
attattatttacattcattattatcttaaccatatttataattgattccaattgaacaacactaagatctgtgaagccttattttacccacatattgtgt |
302 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
31950710 |
attattatttacattcattattatcctaaccatatttataactgattccaattgaacgacactaagatctgtgaagctttattttacctacatattgtgt |
31950611 |
T |
|
| Q |
303 |
taagttgttcaaatttattaaacatttatgtctaaacctgtgttttttcactggcaatatgatatannnnnnnaatatgcattttatccttgattcttgc |
402 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||||| |||||| | ||||||| |||| |
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|
| T |
31950610 |
taagctgttcaaattttttaaacatttatatctaaacatgtgatttttcattggcaatatgatatattcctttaatattcattttcttcttgatttttgc |
31950511 |
T |
|
| Q |
403 |
ctactatttttgttgcctttattattaatgttgtcactgcctacatattcttctatgaccaacttgtgtaatataatattttctacatatt |
493 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |||||||||||||||| ||||| |||||||||||||| |||||||||| || |||||||| |
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|
| T |
31950510 |
ctactatttttgttgccttcatttttaatgatgtcactgcctacataatcttccatgaccaacttgtgcaatataatatcttttacatatt |
31950420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 34 - 444
Target Start/End: Complemental strand, 3498361 - 3497957
Alignment:
| Q |
34 |
ttcagcatatgtgagttctgaagttgcgcccactacccagtgttgtggtgtagcaggggtagcctttgatctgatgtgtggtggttctgtgatagttgtt |
133 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| || | |
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|
| T |
3498361 |
ttcagcatatgtgagttctgaagctgcaccctctacccagtgttgtggtgtagcaggggtagcctttgatccaacgcgtggtggttctgtgatagctgct |
3498262 |
T |
|
| Q |
134 |
ttcgtagttgagggtatgtacataattctaatttgaatcccccgttcaatttcaatatattctttgtaaattattatttacattcattattatcttaacc |
233 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
3498261 |
gttgtagttgagggtatgtacataattctaacttgaatcc-----tcaatttcaatatattctttgtacattattatttacattcattattatcctaacc |
3498167 |
T |
|
| Q |
234 |
atatttat-aattgattccaattgaacaacactaagatctgtgaagccttattttacccacatattgtgttaagttgttcaaatttattaaacatttatg |
332 |
Q |
| |
|
|||||||| || | ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||| |
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|
| T |
3498166 |
atatttataaactaattacaattgaatggcactaagatctgtgaagccttattttacc--catattgtgttaaactgttcaagttttttaaacatttatg |
3498069 |
T |
|
| Q |
333 |
tctaaacctgtgttttttcactggcaatatgatatannnnnnnaatatgcattttatccttgattcttgcctactatttttgttgcctttattattaatg |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
3498068 |
tctaaacctgtgttttttcactggcaatatgatatattcctttaatatgcattttctccttgattcttgcctactattactgttgccttcattattaatg |
3497969 |
T |
|
| Q |
433 |
ttgtcactgcct |
444 |
Q |
| |
|
|||||| |||| |
|
|
| T |
3497968 |
ctgtcacggcct |
3497957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 62 - 285
Target Start/End: Complemental strand, 3510507 - 3510281
Alignment:
| Q |
62 |
cccactacccagtgttgtggtgtagcaggggtagcctttgatctgatgtgtggtggttctgtgatagttgttttcgtagttgagggtatgtacataattc |
161 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||| |||| || ||| ||||||||||||| || | | |||||||||||||| | || |||| |
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|
| T |
3510507 |
cccactacctggtgttctggtgtagcaggggcagccttcgatccgactcgtgacggttctgtgatagctgctgtgatagttgagggtatgcatatgattc |
3510408 |
T |
|
| Q |
162 |
taatttgaatcccccgt---tcaatttcaatatattctttgtaaattattatttacattcattattatcttaaccatatttataattgattccaattgaa |
258 |
Q |
| |
|
| | |||| ||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||||| |||| ||||||||| |
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|
| T |
3510407 |
tgacttgatcttcccgtccttcaatttcaatatattctttgtacattattatttacattcgtcattatctaaaccatatttataactgataccaattgaa |
3510308 |
T |
|
| Q |
259 |
caacactaagatctgtgaagccttatt |
285 |
Q |
| |
|
||| ||||||||||||| |||||| |
|
|
| T |
3510307 |
tggcaccaagatctgtgaagtcttatt |
3510281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 22927361 - 22927475
Alignment:
| Q |
178 |
ttcaatttcaatatattctttgtaaattattatttacattcattattatcttaaccatatttataattgattccaattgaacaacactaagatctgtgaa |
277 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||| | ||||||||||| ||| |||||||| |||| |
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|
| T |
22927361 |
ttcagttttaatatattctttgtacattattatttacattcatcattattttaaccatatatataactatttccaattgaatgacattaagatctatgaa |
22927460 |
T |
|
| Q |
278 |
gccttattttaccca |
292 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22927461 |
gccttattttaccca |
22927475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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