View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_5 (Length: 491)
Name: NF15176_low_5
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 45693136 - 45693600
Alignment:
| Q |
19 |
aagaaaacattgaagcacttggcattggcatgtgcagtccctgaccagcttgaagcccaaacatttgaggatttggtcttgccatcccatgtaaagcagc |
118 |
Q |
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| T |
45693136 |
aagaaaacattgaagcacttggcattggcatgtgcagtccctgaccagcttgaagcccaaacatttgaggatttggtcttaccatcccatgtaaagcagc |
45693235 |
T |
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| Q |
119 |
aagtccagatgtatgtgcaacaggaaggtgagttccttcaaattgaggcacccccaatcccatttgcatggcaacactcatgggtgaaaagggaaacatg |
218 |
Q |
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| T |
45693236 |
aagtccagatgtatgtgcaacaggaaggtgagttccttgaaattgaggcacccccaatcccatttgcatggcaacactcatgggtgaaaagggaaacatg |
45693335 |
T |
|
| Q |
219 |
tgagccgcatgcatgtgctgcattcctgctggtaacatcataggcatgtataaaccaccacctcccattgacatgatctgtgtaaaaagatcagaaaaaa |
318 |
Q |
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| T |
45693336 |
tgagccgcatgcatgtgctgcattcctgctggtaacgtcataggcatgtataaaccaccacctcccattgacatgatctgtgtaaaaagatcagaaaaaa |
45693435 |
T |
|
| Q |
319 |
tatcgcgttagaatggatataatataatgtgaaatatcaaaattcaaaggattgaagggaaaatgtaaaagggaagagaaagaatacttgcagttggagt |
418 |
Q |
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| T |
45693436 |
tatcgcattagaatggatataatataatgtgaaatatcaaaattcaaaggattgaagggaaaatgtaaaagggaagagaaagaatacttgcagttggagt |
45693535 |
T |
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| Q |
419 |
tgaagtgatttaagatactcaattgcctcatctagcattgaagctttatccgcctaagaattatc |
483 |
Q |
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| T |
45693536 |
tgaagtgatttaagatactcaattgcctcatccagcattgaagctttatccgcctaagaaatatc |
45693600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 37935757 - 37935686
Alignment:
| Q |
403 |
tacttgcagttggagttgaagtgatttaagatactcaattgcctcatctagcattgaagctttatccgccta |
474 |
Q |
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|||||| | |||||| ||||||| ||| |||||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
37935757 |
tacttgaacttggagctgaagtgtttttagatactcaattgcctcatccagcatagaagctttatccaccta |
37935686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 37935913 - 37935835
Alignment:
| Q |
225 |
gcatgcatgtgctgcattcctgctggtaacatcat---aggcatgtataaaccaccacctcccattgacatgatctgtgtaa |
303 |
Q |
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|||||||||||||||||||| || ||||||||||| |||||| ||||| |||| ||||||||||||| ||||| |||| |
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| T |
37935913 |
gcatgcatgtgctgcattccagcaggtaacatcatttgaggcatatataa---accagctcccattgacatcatctgcgtaa |
37935835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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