View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15176_low_6 (Length: 484)

Name: NF15176_low_6
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15176_low_6
NF15176_low_6
[»] chr8 (4 HSPs)
chr8 (11-470)||(27813415-27813876)
chr8 (281-470)||(25640836-25641027)
chr8 (385-440)||(4755977-4756033)
chr8 (395-455)||(4743791-4743852)
[»] chr3 (1 HSPs)
chr3 (281-470)||(7404133-7404324)
[»] chr7 (3 HSPs)
chr7 (281-470)||(4683132-4683323)
chr7 (343-458)||(27137447-27137563)
chr7 (383-456)||(1528295-1528369)
[»] chr6 (2 HSPs)
chr6 (349-470)||(30824851-30824973)
chr6 (116-149)||(6761839-6761872)
[»] chr4 (3 HSPs)
chr4 (281-470)||(53302209-53302400)
chr4 (281-398)||(47064141-47064259)
chr4 (385-440)||(4889272-4889328)
[»] chr2 (4 HSPs)
chr2 (221-470)||(31481696-31481947)
chr2 (281-470)||(30268883-30269074)
chr2 (281-470)||(31332155-31332346)
chr2 (281-470)||(31338885-31339076)
[»] chr1 (2 HSPs)
chr1 (396-464)||(47694323-47694392)
chr1 (383-453)||(47799707-47799778)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 27813415 - 27813876
Alignment:
Q  11 catagggcaaaaatcatttataagcagatataggataaagagcttaattaatcttaaattaatcaaaatctgcgactaacaacaaaaaatctaaaa---- 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        
T  27813415 cataaggcaaaaatcatttataagcagatataggataaagagcttaattaatcttaaattaatcaaaatctgcgactaacaacaaacaatctaaaaccag 27813514  T
Q  107 -gtatgcaatattatcaatgcaaacagaaaggatacctttacgctattagaggtttctaatagctcctcttaaaactatttcagaaagttatcaatattt 205  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  27813515 agtatgcaatattatcaatgcaaacagaaaggatacctttacactattggaggtttctaatagctc---ttaaaactatttcagaaagttatcaatattt 27813611  T
Q  206 caggtaaagttatctactgcagtggcaccacataacaaaatctgccccgaccaatgtacacaagtatcctttcgtctctgatagccaccactgtcggagc 305  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27813612 caggtaaagttatctactgcagtggcactacataacaaaatcagccccgaccaatgtacacaagtatcctttcggctctgatagccaccactgtcggagc 27813711  T
Q  306 tgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccatttcttcaaccctaagtttccaacaat 405  Q
    ||||||||| ||||||| |||||| ||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27813712 tgaagcagcaatagtttggttgtgcgtgacggaaaactgatcggcatttgtaccatcgagaaacaaatatccatttcttcaaccctaagtttccaacaat 27813811  T
Q  406 ttagttaagatcgaatctaaatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  27813812 ttagttaagatcgaatctaaatttacacataatcgcattctgaacaaacaaatccgttcgttttg 27813876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 281 - 470
Target Start/End: Original strand, 25640836 - 25641027
Alignment:
Q  281 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 379  Q
    |||||||||||||| ||| || ||||| ||||||  ||||||| |||||| ||||| | |||||| ||||||| |||| ||| ||||||| |||||||||    
T  25640836 ctctgatagccacccactttcagagctaaagcagtaatagtttggttgtgcgtgacgggaaactgtccggcttctgtatcattgaggaactaatatccat 25640935  T
Q  380 ttcttcaaccctaagtttccaacaatttagttaagatcgaatct-aaatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| || |||| |||||    
T  25640936 ttcttcaatcctaagtttccaacattttagttaagatctaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttg 25641027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 4755977 - 4756033
Alignment:
Q  385 caaccctaagtttccaacaatttagttaagatcgaatcta-aatttacacataatcg 440  Q
    |||||||||||||||||||||| |||||||||| ||| || ||||| ||||||||||    
T  4755977 caaccctaagtttccaacaattcagttaagatcaaatatagaatttgcacataatcg 4756033  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 455
Target Start/End: Original strand, 4743791 - 4743852
Alignment:
Q  395 tttccaacaatttagttaagatcgaatcta-aatttacacataatcgcattccaaacaaaca 455  Q
    |||||||||||||||||||||||||||  | ||||| |||||||||| ||| |||| |||||    
T  4743791 tttccaacaatttagttaagatcgaataaagaatttgcacataatcgtatttcaaataaaca 4743852  T

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Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 281 - 470
Target Start/End: Complemental strand, 7404324 - 7404133
Alignment:
Q  281 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 379  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||| | |||||||||||||| |||| ||||||||||| |||||||||    
T  7404324 ctctgatagccacccactgtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaactgaccggcttctgtatcatcgaggaactaatatccat 7404225  T
Q  380 ttcttcaaccctaagtttccaacaatttagttaagatcgaatct-aaatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||| |||||    
T  7404224 ttcttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttg 7404133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 281 - 470
Target Start/End: Complemental strand, 4683323 - 4683132
Alignment:
Q  281 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 379  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||| | |||||||||||||| |||| ||||||||||| |||||||||    
T  4683323 ctctgatagccacccactgtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaactgaccggcttctgtatcatcgaggaactaatatccat 4683224  T
Q  380 ttcttcaaccctaagtttccaacaatttagttaagatcgaatct-aaatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||| || |||| |||||    
T  4683223 ttcttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaagaaacaattctgttcattttg 4683132  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 343 - 458
Target Start/End: Original strand, 27137447 - 27137563
Alignment:
Q  343 tgaccggcttttgtaccatcgaggaacaaatatccatttcttcaaccctaagtttccaacaatttagttaagatcgaatcta-aatttacacataatcgc 441  Q
    ||||| |||| || || |||||||||  ||||||||||||||||| || ||||||||||||||||  ||||||||||||||| |||| |||| |||| ||    
T  27137447 tgaccagcttctgcacaatcgaggaatcaatatccatttcttcaatccaaagtttccaacaattttcttaagatcgaatctataattcacacctaattgc 27137546  T
Q  442 attccaaacaaacaaat 458  Q
    | |||||||||||||||    
T  27137547 aatccaaacaaacaaat 27137563  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 456
Target Start/End: Complemental strand, 1528369 - 1528295
Alignment:
Q  383 ttcaaccctaagtttccaacaatttagttaagatcgaatcta-aatttacacataatcgcattccaaacaaacaa 456  Q
    |||||||||||||||| |||||||||||||||| |||||||| || ||||||||||| ||||||  |||||||||    
T  1528369 ttcaaccctaagtttctaacaatttagttaagaccgaatctataaattacacataattgcattctgaacaaacaa 1528295  T

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Target: chr6 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 349 - 470
Target Start/End: Original strand, 30824851 - 30824973
Alignment:
Q  349 gcttttgtaccatcgaggaacaaatatccatttcttcaaccctaagtttccaacaatttagttaagatcgaatct-aaatttacacataatcgcattcca 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  30824851 gcttttgtaccatcgaggaacaaatatccatttcttcaaccctaagtttccaacaatttagttaagatcgaatctaaaatttacacataatcgcattccg 30824950  T
Q  448 aacaaacaaatccgttcgttttg 470  Q
    |||||||||||||||||||||||    
T  30824951 aacaaacaaatccgttcgttttg 30824973  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 6761839 - 6761872
Alignment:
Q  116 attatcaatgcaaacagaaaggatacctttacgc 149  Q
    |||||||||||||||||||||| |||||||||||    
T  6761839 attatcaatgcaaacagaaagggtacctttacgc 6761872  T

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Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 281 - 470
Target Start/End: Original strand, 53302209 - 53302400
Alignment:
Q  281 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 379  Q
    |||||||||||||| |||||||||||||||||||| ||| ||| |||||| ||||| | |||||||||| ||| |||| ||||||||||| |||||||||    
T  53302209 ctctgatagccacccactgtcggagctgaagcagcaatactttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccat 53302308  T
Q  380 ttcttcaaccctaagtttccaacaatttagttaagatcgaatct-aaatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    |||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||| |||| |||||    
T  53302309 ttcttcaaccctaagtttccacaattttagttaagatcgaatctaaaatttacacataatcgcattctgaacaaacaaatctgttcattttg 53302400  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 47064259 - 47064141
Alignment:
Q  281 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 379  Q
    |||| ||||||||| |||||||||||||||||||| ||||||| |||||| ||||| | |||||||||| ||| |||| ||||||||||| |||||||||    
T  47064259 ctctaatagccacccactgtcggagctgaagcagcaatagtttggttgtgcgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccat 47064160  T
Q  380 ttcttcaaccctaagtttc 398  Q
    ||||| |||||||||||||    
T  47064159 ttctttaaccctaagtttc 47064141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 4889272 - 4889328
Alignment:
Q  385 caaccctaagtttccaacaatttagttaagatcgaatcta-aatttacacataatcg 440  Q
    |||||||||||||||||||||| |||||||||| ||| || ||||| ||||||||||    
T  4889272 caaccctaagtttccaacaattcagttaagatcaaatatagaatttgcacataatcg 4889328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 221 - 470
Target Start/End: Original strand, 31481696 - 31481947
Alignment:
Q  221 actgcagtggcaccacataacaaaatctgcc-ccgaccaatgtacacaagtatcctttcgtctctgatagccaccactgtcggagctgaagcagcgatag 319  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||   |||| || |||| || ||||||||||| |||  ||| |||||| |||     
T  31481696 actgcagtggcaccacataacaaaatcagcctccgaccaatgtacacaatcgtcctctcctctccgagagccaccactgccggcactggagcagcaatat 31481795  T
Q  320 ttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccatttcttcaaccctaagtttccaacaatttagttaagatcga 419  Q
    ||| ||| ||  |||  | || |||| |||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31481796 tttggttctgcatgatgggaacctgatcggcttctgtaccatcaagaaaccaatatccatttcttcaaccctaagtttccaacaatttagttaagatcga 31481895  T
Q  420 atcta-aatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    ||||| ||||| || |||||||||||||||||||||||  || |||||||||    
T  31481896 atctagaattttcagataatcgcattccaaacaaacaatgccattcgttttg 31481947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 281 - 470
Target Start/End: Original strand, 30268883 - 30269074
Alignment:
Q  281 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 379  Q
    |||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||| | |||||||||| ||| |||| ||||||||||| |||||||||    
T  30268883 ctctaatagccacccactgtcggagctgaagcagcaatagtttggttgtgtgtgacgggaaactgaccgacttctgtatcatcgaggaactaatatccat 30268982  T
Q  380 ttcttcaaccctaagtttccaacaatttagttaagatcgaatct-aaatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    |||||||||||||||||||||| | |||||||||  |||||||| ||||||||  ||||||||||||| |||||||||||| |||| |||||    
T  30268983 ttcttcaaccctaagtttccaaaattttagttaaagtcgaatctaaaatttacggataatcgcattccgaacaaacaaatctgttcattttg 30269074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 281 - 470
Target Start/End: Complemental strand, 31332346 - 31332155
Alignment:
Q  281 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 379  Q
    |||||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||| | |||| ||||| ||| |||| ||| ||||||| |||||||||    
T  31332346 ctctgatagccacccactgtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaacagaccgacttctgtatcattgaggaactaatatccat 31332247  T
Q  380 ttcttcaaccctaagtttccaacaatttagttaagatcgaatct-aaatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||| |||||    
T  31332246 ttcttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttg 31332155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 281 - 470
Target Start/End: Complemental strand, 31339076 - 31338885
Alignment:
Q  281 ctctgatagccacc-actgtcggagctgaagcagcgatagttttgttgtgtgtgacagaaaactgaccggcttttgtaccatcgaggaacaaatatccat 379  Q
    |||||||||||||| || ||||||||| ||||||| ||||||| |||||| ||||| | |||| ||||| ||| |||| ||| ||||||| |||||||||    
T  31339076 ctctgatagccacccacagtcggagctaaagcagcaatagtttggttgtgcgtgacgggaaacagaccgacttctgtatcattgaggaactaatatccat 31338977  T
Q  380 ttcttcaaccctaagtttccaacaatttagttaagatcgaatct-aaatttacacataatcgcattccaaacaaacaaatccgttcgttttg 470  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||| |||||    
T  31338976 ttcttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttg 31338885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 464
Target Start/End: Complemental strand, 47694392 - 47694323
Alignment:
Q  396 ttccaacaatttagttaagatcgaatctaaatttac-acataatcgcattccaaacaaacaaatccgttc 464  Q
    |||||| |||||||||||||||||||||| | |||| ||||||||||||| ||||||||||| |||||||    
T  47694392 ttccaataatttagttaagatcgaatctagaattaccacataatcgcattacaaacaaacaattccgttc 47694323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 453
Target Start/End: Complemental strand, 47799778 - 47799707
Alignment:
Q  383 ttcaaccctaagtttccaacaatttagttaagatcgaatcta-aatttacacataatcgcattccaaacaaa 453  Q
    ||||||||||||||| ||| |||||||||||| | ||||||| || || || ||||||||||||| ||||||    
T  47799778 ttcaaccctaagttttcaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaa 47799707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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