View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15176_low_8 (Length: 414)
Name: NF15176_low_8
Description: NF15176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15176_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 30601196 - 30601582
Alignment:
| Q |
16 |
ataatttctcaattcccttcaaacatatccacatacacaacaacaaaccataagaaaacaagaatcttctacattgtacacacaaatatggtattattaa |
115 |
Q |
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| T |
30601196 |
ataatttctcaattcccttcaaacatatccacatacacaacaacaaaccataacaaaacaagaatcttctacattgtacacacaaatatggtattattaa |
30601295 |
T |
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| Q |
116 |
ggttctctttgaacatatnnnnnnntcttcttcacaaaccacttcaagttcaattttttcctaaaaaaccattccaaatctatttcacctattagaccaa |
215 |
Q |
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| T |
30601296 |
ggttctctttgaacatataaaaaaatcttcttcacaaaccacttcaagttcaatcttttcctaaaaaaccattccaaatctatttcacctattagaccaa |
30601395 |
T |
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| Q |
216 |
acttcacttctgaagttacgctgaaagtaccgagtgtgacttaagtcagagatgctaaaccaacccaactcagaaaactcatccaccaatccattgaatc |
315 |
Q |
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| T |
30601396 |
atttcacttctcaactcacgctgaaagtaccgagtgtaacttaagtcagagatgctaaaccaacccaactcagaaaactcatccaccaatccattgaatc |
30601495 |
T |
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| Q |
316 |
aactagcacaaaacatgtcctccgacaactacatcatgcttgcagcaatcatttctctcctcctagtaatcatctttgtcctccttc |
402 |
Q |
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| T |
30601496 |
aactagcacaaaacatgtcctccgacaactacatcatgcttgcagcaatcatttctctcctcctagtaatcatctttgtcctccttc |
30601582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 7255032 - 7255062
Alignment:
| Q |
233 |
acgctgaaagtaccgagtgtgacttaagtca |
263 |
Q |
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| T |
7255032 |
acgctgaaagtaccgagtgtgacttaagtca |
7255062 |
T |
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