View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15177_high_4 (Length: 334)
Name: NF15177_high_4
Description: NF15177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15177_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 3800940 - 3801242
Alignment:
| Q |
19 |
atcagatcggtggtgatccatcgatgacagagaagacgaagaatggaaaattatgtttgtt---tgaatatatttctttcaaacaatgaagatggctttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
3800940 |
atcagatcggtggtgatccatcgatgacagagaagatgaagaatggaaaattatgtttgttgtttgaatatatttctttcaa-caatgaagatggctttt |
3801038 |
T |
|
| Q |
116 |
caatggctttgttcagtttcttatttacttgttggagagaaggaggaagggaacgagaaacaagctctgttctgaaataaatctgaagtgttgcagttag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3801039 |
caatggctttgttcagtttcttatttacttgttggagagaaggaggaagggaacgaggaacaagctctgttctgaaataaatctgaagtgttgcagttag |
3801138 |
T |
|
| Q |
216 |
taaacagggtgggtgtactagaaaaagcaaacagcataaaaagctgnnnnnnnncctactaggccatcccattcttgttcccacttatttcatcagctct |
315 |
Q |
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|||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3801139 |
taaaaagggtgggtgtactagaaaaagcaaacaacat-aaaagctgtgttttttcctactaggccatcccattcttgttcccacttatttcatcagctct |
3801237 |
T |
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| Q |
316 |
taggt |
320 |
Q |
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||||| |
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| T |
3801238 |
taggt |
3801242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 3990387 - 3990624
Alignment:
| Q |
19 |
atcagatcggtggtga-tccatcgatgacagagaagacgaagaatggaaaattatgtttgtt---tgaatatatttctttcaaacaatgaagatggcttt |
114 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |
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| T |
3990387 |
atcagatcggtggtgaatccatggatgacagagaggacgaagaatggaaaattatgtttgttgtttgaatatatgtctttcaa-caatgaagatggcttt |
3990485 |
T |
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| Q |
115 |
tcaatggctttgttcagtttcttatttacttgttggagagaaggaggaagggaacgagaaacaagctctgttctgaaataaatctgaagtgttgcagtta |
214 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||| ||||| |
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| T |
3990486 |
tcaatggctttgttcagtttcttatttacctgttggagagaaggaggaaaggaacgaggaacaagctctcttctgaaataaat---aagtgttgtagtta |
3990582 |
T |
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| Q |
215 |
gtaaacagggtgggtgtactagaaaaagcaaacagcataaaaa |
257 |
Q |
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| T |
3990583 |
gtaaacagggtggg-gtactagaaaaagcaaacaacataaaaa |
3990624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 16138429 - 16138504
Alignment:
| Q |
183 |
tgttctgaaataaatctgaagtgttgcagttagtaaacagggt-gggtgtactagaaaaagcaaacagcataaaaa |
257 |
Q |
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| T |
16138429 |
tgttctgaaatatatctgaagtgttgtagttagtaaacagggtggggtgtactagaaaaagcaaacaccattaaaa |
16138504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 46260288 - 46260326
Alignment:
| Q |
274 |
ctaggccatcccattcttgttcccacttatttcatcagc |
312 |
Q |
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| T |
46260288 |
ctaggccatcccattcttgttcccacttatttcatcagc |
46260326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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