View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15177_high_9 (Length: 228)
Name: NF15177_high_9
Description: NF15177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15177_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 233374 - 233597
Alignment:
| Q |
1 |
ctacattttattgcatgtcggttgcaagattcgctgagctcttataacctttaatgcacactttatttattttttagctagctaaccctaaaatgcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
233374 |
ctacattttattgcatgtcggttgcaagattcgctgagctcttataacctttaatgcacactttatttattttttagctagctagccctaaaatgcaatg |
233473 |
T |
|
| Q |
101 |
caagtgtattaaatagtaacccctgattttattcttcaattgaagtatcacgactcattttacagc-nnnnnnngtagtatcaagattcatggttggttg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
233474 |
caagtgtattaaatagtaacccctgattttattcttcaattgaagtatcacgactcattttacagcaaaaaaaagtagtatcaagattcatggttggttg |
233573 |
T |
|
| Q |
200 |
actgctgtaatattcagatttgat |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
233574 |
actgctgtaatattcagatttgat |
233597 |
T |
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