View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15177_low_11 (Length: 219)
Name: NF15177_low_11
Description: NF15177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15177_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 10546608 - 10546419
Alignment:
| Q |
18 |
attaaatactacttcacgaacattaggcaccctttccacttgaagaacattaatagataatgtgttaatagcatttgatcgacacctagaagataaaact |
117 |
Q |
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| T |
10546608 |
attaaatactgttttacgaacattaggcaccccttccacttgaaaaccattaatagataatgtgttaatagcatttgatcgacacctagaagataaaact |
10546509 |
T |
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| Q |
118 |
ccatgaaaaaactgtgttagcatcaccttctattaaccagcacaatcttgtgttttgccaatgcataccagaattaatttttgccaaagt |
207 |
Q |
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| T |
10546508 |
ccatgaaaaaactgtgttagcttcaccttctattaaccagcacgatcttgtgttttgccaatgcataccggaattaatttttgccaaagt |
10546419 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 20393142 - 20393333
Alignment:
| Q |
18 |
attaaatactacttcacgaacattaggcaccctttccacttgaagaacattaatagataatgtgttaatagcatttgatcgacacctagaagataaaact |
117 |
Q |
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| T |
20393142 |
attaaataccacttctcgaacattagacagcccttccacttgaagaccgttaacagttatagagttaattgcatttgaccgacgtttaaaacataacaca |
20393241 |
T |
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| Q |
118 |
ccatgaaaaaac---tgtgttagcatcaccttctattaaccagcacaatcttgtgttttgccaatgcataccagaattaatttttgccaaag |
206 |
Q |
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| T |
20393242 |
acatgaaaaaagaattatattagcatcaccctctttcaaccagcacaatcttgaattctaccactgcatactagaattaattcttgccaaag |
20393333 |
T |
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