View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15177_low_2 (Length: 521)

Name: NF15177_low_2
Description: NF15177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15177_low_2
NF15177_low_2
[»] chr5 (5 HSPs)
chr5 (9-183)||(14505161-14505338)
chr5 (283-480)||(14506079-14506277)
chr5 (180-217)||(14506043-14506080)
chr5 (472-505)||(14506349-14506382)
chr5 (223-267)||(38015916-38015960)
[»] chr8 (1 HSPs)
chr8 (223-280)||(23141766-23141823)
[»] chr2 (2 HSPs)
chr2 (223-280)||(3395423-3395480)
chr2 (223-267)||(36727617-36727661)
[»] chr4 (1 HSPs)
chr4 (223-267)||(13228751-13228795)
[»] chr6 (1 HSPs)
chr6 (223-280)||(1599741-1599798)
[»] chr3 (1 HSPs)
chr3 (223-280)||(50331929-50331986)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 14505161 - 14505338
Alignment:
Q  9 gagaagaacgtgggtctttgtttattacaaatgatgaaggaaa-tttcattgcattagtgttcacaacctgatatgagatcactgaaacaaaaagaagca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14505161 gagaagaacgtgggtctttgtttattacaaatgatgaaggaaaatttcattgcattagtgttcacaatctgatatgagatcactgaaacaaaaagaagca 14505260  T
Q  108 tcaaatgctataaacaaatattggattga--aggaacatatacactaaggaattaacatgtatattaagaaggttaat 183  Q
    | |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||    
T  14505261 tgaaatgctataaacaaatattggattgaataggaacatatgcactaaggaattaacatgtatattaagaaggttaat 14505338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 283 - 480
Target Start/End: Original strand, 14506079 - 14506277
Alignment:
Q  283 ataaaaatatgatatcaaaattcgcttgcggttgatcttaattcaatgcgatgatttaccttaannnnnnngactccccggaattcccaacacaaattct 382  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||       ||||||||| |||||||||||||||||||    
T  14506079 ataaaaatatgatatcaaaattcgcttacggttgatcttaattcaatgcgatgatttacccaaatttttttgactccccgaaattcccaacacaaattct 14506178  T
Q  383 ttgactataagtaaaaatattattggactatcttttcatctatctagg-nnnnnnntaaatttgtttttattggtgataaaatatcagtgtatcactca 480  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  14506179 ttgactataagtaaaattattattggactatcttttcatctatctaggaaaataaataaatttgtttttattggtgataaaatatcagtgtatcactca 14506277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 14506043 - 14506080
Alignment:
Q  180 taatatgttaaatgtgagttagaaattgaatatttgat 217  Q
    |||| |||||||||||||||||||||||||||||||||    
T  14506043 taatgtgttaaatgtgagttagaaattgaatatttgat 14506080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 14506349 - 14506382
Alignment:
Q  472 tatcactcatagatttgaagtcttagtcatatat 505  Q
    |||| |||||||||||||||||||||||||||||    
T  14506349 tatctctcatagatttgaagtcttagtcatatat 14506382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 38015960 - 38015916
Alignment:
Q  223 gtagatgttaagaaacatataaatgagatgacttatatatctaat 267  Q
    ||||||||| || ||||||||| |||||||||| |||||||||||    
T  38015960 gtagatgttgagcaacatataagtgagatgactcatatatctaat 38015916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 23141823 - 23141766
Alignment:
Q  223 gtagatgttaagaaacatataaatgagatgacttatatatctaatatttaaagatttt 280  Q
    ||||||||| ||||||||||||||||||||||| || |||||||| | | ||||||||    
T  23141823 gtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagatttt 23141766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 3395480 - 3395423
Alignment:
Q  223 gtagatgttaagaaacatataaatgagatgacttatatatctaatatttaaagatttt 280  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||| | | ||||||||    
T  3395480 gtagatgttgagaaacatataagtgagatgactcatatatctaatgtcttaagatttt 3395423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 36727661 - 36727617
Alignment:
Q  223 gtagatgttaagaaacatataaatgagatgacttatatatctaat 267  Q
    |||||||||||||||||||||  |||||||||| ||||| |||||    
T  36727661 gtagatgttaagaaacatatatgtgagatgactaatatagctaat 36727617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 13228751 - 13228795
Alignment:
Q  223 gtagatgttaagaaacatataaatgagatgacttatatatctaat 267  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||    
T  13228751 gtagatgttgagaaacatataagtgagatgactcatatatctaat 13228795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 1599741 - 1599798
Alignment:
Q  223 gtagatgttaagaaacatataaatgagatgacttatatatctaatatttaaagatttt 280  Q
    ||||||||| |||||||||||| |||||||||| || |||||||| | | ||||||||    
T  1599741 gtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagatttt 1599798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 50331986 - 50331929
Alignment:
Q  223 gtagatgttaagaaacatataaatgagatgacttatatatctaatatttaaagatttt 280  Q
    ||||||||| |||||||||||| |||||||||| || |||||||| | | ||||||||    
T  50331986 gtagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagatttt 50331929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University