View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15177_low_3 (Length: 431)
Name: NF15177_low_3
Description: NF15177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15177_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 21360019 - 21359785
Alignment:
| Q |
1 |
tactttggttttcttaccttaaactaaaaattcacctaaaataaaaatccaagcttatagatttttctctctctaagagggaactgcaggtttgttatca |
100 |
Q |
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| T |
21360019 |
tactttggttttcttaccttaaactaaaaattcacctaaaataaaaatccaagcttatagatttttctctctctaaaagggaactgcaggtttgttatca |
21359920 |
T |
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| Q |
101 |
aagaagtgattttttgaataaagtgcttttgatttgtgggaaaaaagcttcaatagaagacagggtgctaaaagtagcacaggatcagaaaatgggtatc |
200 |
Q |
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| T |
21359919 |
aagaagtgattttttgaataaagtgcttttgatttgtgggaaaaaagcttcaatagaagacagggtgctaaaagtagcacaggatcagaaaatgggtatc |
21359820 |
T |
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| Q |
201 |
tttctcttcctactttttcatttaaagttaggtcc |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
21359819 |
tttctcttcctactttttcatttaaagttaggtcc |
21359785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 267 - 376
Target Start/End: Complemental strand, 21359765 - 21359656
Alignment:
| Q |
267 |
cttgggtttgtttctgaaactgtttctgactagggtttgaatgaggttatttattatgctgaaatcaatgttgtttgcataattgactgtttctatagac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21359765 |
cttgggtttgtttctgaaactgtttctgactagggtttgaatgaggttatttattatgctgaaatcaatgttgtttgcataattgactgtttctgtagac |
21359666 |
T |
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| Q |
367 |
ttcttttcac |
376 |
Q |
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| T |
21359665 |
ttcttttcac |
21359656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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