View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15177_low_5 (Length: 287)
Name: NF15177_low_5
Description: NF15177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15177_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 3440054 - 3439789
Alignment:
| Q |
1 |
agcacaaataccaaaaactgagaaatcttgaagaaaatttacacttctagttctacatgatttttatacaatcccctgcaacaccaaattttacaattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3440054 |
agcacaaataccaaaaactgagaaatcttgaagaaaatttacacttctagctctacatgatttttatacaatcccctgcaacaccaaattttacaattca |
3439955 |
T |
|
| Q |
101 |
ttaggttctaatgaaattagaaggaaaacacaaatcggttccacataaaaaatggaactactacagcctagctagaggcaccaaaagcacttcacacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3439954 |
ttaggttctaatgaaattagaaggaaaacacaaatcggttccacataaaaaatggaactactacagcctagctagaggcaccaaaagcacttcacacaaa |
3439855 |
T |
|
| Q |
201 |
aactatacttcgttcttcctcaacattcannnnnnnatatagccaactggagtcagaaattccaac |
266 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3439854 |
aactatacttcgttcttcctcaacattcatttttttatatagccaactggagtcagaaattccaac |
3439789 |
T |
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