View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15177_low_7 (Length: 271)
Name: NF15177_low_7
Description: NF15177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15177_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3439721 - 3439466
Alignment:
| Q |
1 |
accacatgcagccattataaccacttggatccctcccatccatttcatactgcagtcagatgaaattgtagtcatttatnnnnnnntccttttgtctcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3439721 |
accacatgcagccattataaccacttggatccctcccatccatttcatactgcagtcagatgaaattgtagtcatttataaaaaaatccttttgtctcat |
3439622 |
T |
|
| Q |
101 |
gaaaactgcatctgtaattagattgcttctctacaatgttgactaatggttagtatataccttatcatttaaatatacacatatctcaagtgcttcttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3439621 |
gaaaactgcatctgtaattagattgcttctctacaatgttgactaatggttagtatataccttatcatttaaatatatacatatctcaagtgcttcttca |
3439522 |
T |
|
| Q |
201 |
ggtcctcttgtccattcaagtatcttcttcgcccaatacattctgtacaagaaact |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3439521 |
ggtcctcttgtccattcaagtatcttcttcgcccaatacattctgtacaagaaact |
3439466 |
T |
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