View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15177_low_8 (Length: 260)

Name: NF15177_low_8
Description: NF15177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15177_low_8
NF15177_low_8
[»] chr6 (10 HSPs)
chr6 (8-243)||(2997710-2997945)
chr6 (8-210)||(2934162-2934364)
chr6 (8-243)||(3004094-3004329)
chr6 (8-243)||(2982396-2982637)
chr6 (8-210)||(2926723-2926925)
chr6 (8-210)||(2951505-2951707)
chr6 (8-243)||(2659316-2659551)
chr6 (8-243)||(2964012-2964253)
chr6 (104-243)||(2972528-2972669)
chr6 (199-243)||(2929416-2929460)
[»] chr7 (1 HSPs)
chr7 (27-226)||(3338728-3338927)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-243)||(35549-35775)
[»] chr3 (1 HSPs)
chr3 (96-151)||(49613037-49613092)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 2997710 - 2997945
Alignment:
Q  8 agaatatggtagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggaga 107  Q
    |||| ||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2997710 agaaaatggtagggtttcggaataacaacgtttgaaattagataagatagaatctacgtagcatactaagtcatttaaacatgcctcagttcgttggaga 2997809  T
Q  108 aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997810 aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 2997909  T
Q  208 cttcattgagtttgcgaattttagaggggaccttgt 243  Q
    || | |||||||||||||||||||||||||||||||    
T  2997910 ctgcgttgagtttgcgaattttagaggggaccttgt 2997945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 2934364 - 2934162
Alignment:
Q  8 agaatatggtagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggaga 107  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||  |||| |||||||    
T  2934364 agaaaatggtagggtttcagaataacaacgtttgaaatcagataagatagattctatgtagcagactaagtcgtttaaacatgccttggttctttggaga 2934265  T
Q  108 aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 207  Q
    ||| | ||||||| |||||||||||||  |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2934264 aaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 2934165  T
Q  208 ctt 210  Q
    |||    
T  2934164 ctt 2934162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 3004094 - 3004329
Alignment:
Q  8 agaatatggtagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggaga 107  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||| | ||| |||| ||||||||||||||| |||||||||||||  |||| |||||||    
T  3004094 agaaaatggtagggtttcggaataacaacgtttgaaatcagataagacagattctatgtagcagactaagtcgtttaaacatgccttggttctttggaga 3004193  T
Q  108 aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 207  Q
    ||| | ||||||| |||||||||||||  |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3004194 aaatccttgaagtaaatgagtttctgattttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 3004293  T
Q  208 cttcattgagtttgcgaattttagaggggaccttgt 243  Q
    |||  ||| || |||||||   | ||||||||||||    
T  3004294 ctttgttgtgtctgcgaataacataggggaccttgt 3004329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 2982637 - 2982396
Alignment:
Q  8 agaatatggtagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggaga 107  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||| |||||||| |||    
T  2982637 agaaaatggtaggggttcagaataacagtgtttgaaatcagataagatagaatctacgtagcagaccaagtcgtttaaagatgcctcggttcgttgaaga 2982538  T
Q  108 aaagctttgaagtgaatgagtttctgaggttccatgttttggagctg------tggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgt 201  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||      | | ||||| ||||||||||||||||||||||||||| |||||||||    
T  2982537 aaagctttgaagtgaatgagcttctgacgttccatgttttggagatggaggcctaggtgaccgtggtgaaaggggccaatggaaacgacattgggggtgt 2982438  T
Q  202 atgcgtcttcattgagtttgcgaattttagaggggaccttgt 243  Q
    |||||| ||| |||| | |||||||   ||||||||||||||    
T  2982437 atgcgttttcgttgactgtgcgaataacagaggggaccttgt 2982396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 2926925 - 2926723
Alignment:
Q  8 agaatatggtagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggaga 107  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||| |||||||||||||  |||| |||||||    
T  2926925 agaaaatggtagggtttcggaataacaacgtttgaaatcagataagatagattctatgtagccgactaagtcgtttaaacatgccttggttctttggaga 2926826  T
Q  108 aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 207  Q
    ||| | ||||||| |||||||||||||  |||||||||||||||||| || ||||| ||||||||||||||||| ||||||||  |||||||||||||||    
T  2926825 aaatccttgaagtaaatgagtttctgactttccatgttttggagctggggttgaccgtggtgaaaggggccaatagaaacgaccttgggggtgtatgcgt 2926726  T
Q  208 ctt 210  Q
    |||    
T  2926725 ctt 2926723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 2951707 - 2951505
Alignment:
Q  8 agaatatggtagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggaga 107  Q
    |||| |||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||||   |||||||| |||||||||||||  |||| |||||||    
T  2951707 agaaaatggtagggtttcagaataacaacttttgaaatcagataagatagattctatgtagacaactaagtcgtttaaacatgccttggttctttggaga 2951608  T
Q  108 aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 207  Q
    ||| | ||||||| |||||||||||||  |||||||||||||||||| || ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  2951607 aaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaatggaaacgaccttgggggtgtatgcgt 2951508  T
Q  208 ctt 210  Q
    |||    
T  2951507 ctt 2951505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 2659316 - 2659551
Alignment:
Q  8 agaatatggtagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggaga 107  Q
    |||| ||||||||||||| |||||||| | |||||||  ||||||  |||| | || || || ||| |||   | ||||||||| |  ||||||||||||    
T  2659316 agaaaatggtagggtttcggaataacaacttttgaaacgagataagttagattttatgttgctgaccaaggtgtctaaacatgcattggttcgttggaga 2659415  T
Q  108 aaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgt 207  Q
    |||||||| |||| ||||||||| ||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||||| |    
T  2659416 aaagctttcaagtaaatgagtttgtgacgttccatgttttggagctgggggtgatcatggtgaaaggggccaatggaaacgagagtgggggtgtatgctt 2659515  T
Q  208 cttcattgagtttgcgaattttagaggggaccttgt 243  Q
     ||| |||||| |||||||   ||||||||||||||    
T  2659516 tttcgttgagtgtgcgaatagcagaggggaccttgt 2659551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 2964253 - 2964012
Alignment:
Q  8 agaatatggtagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggaga 107  Q
    |||| ||||||| ||||| |||||||||| ||||||||||||||| |||| ||||| |||| |||| |  || ||||||  || ||| ||||||||||||    
T  2964253 agaaaatggtagagtttcggaataacagcatttgaaatcagataagatagcatctatgtagtagaccatttcgtttaaagttgtctcggttcgttggaga 2964154  T
Q  108 aaagctttgaagtgaatgagtttctgaggttccatgttttgga------gctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgt 201  Q
    ||| ||||||||| ||||||||| ||  |||||||||||||||      | || || ||||| |||||||||||||| ||||||||||   |||||||||    
T  2964153 aaatctttgaagtaaatgagtttttgtcgttccatgttttggatctgggggtgggggtgaccgtggtgaaaggggccgatggaaacgaacttgggggtgt 2964054  T
Q  202 atgcgtcttcattgagtttgcgaattttagaggggaccttgt 243  Q
    |||||| ||| |||||| ||||||| | ||||||||||||||    
T  2964053 atgcgttttcgttgagtgtgcgaatatcagaggggaccttgt 2964012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 2972669 - 2972528
Alignment:
Q  104 gagaaaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtg--t 201  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |  ||| | ||||||||||||||||||||||||||  |||| |||  |    
T  2972669 gagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgactttgggagtgtat 2972570  T
Q  202 atgcgtcttcattgagtttgcgaattttagaggggaccttgt 243  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  2972569 atgcctcttcgttgagtttgcgaattttagaggggaccttgt 2972528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 2929460 - 2929416
Alignment:
Q  199 tgtatgcgtcttcattgagtttgcgaattttagaggggaccttgt 243  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||    
T  2929460 tgtatgcgtcttcgttgagtttgcgaattttagagggaaccttgt 2929416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 3338927 - 3338728
Alignment:
Q  27 gaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttgaagtgaatga 126  Q
    |||||||| ||||||||||||| ||| ||||| ||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||    
T  3338927 gaataacaacgtttgaaatcaggtaagatagactctacgtagaagaccaagtcttttaaacatgcctcggttcgttggagaaaagctttgaagtaaatga 3338828  T
Q  127 gtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattgagtttgcgaat 226  Q
    |||| ||| |||||||||||| |||  | |  | ||| |||||||||||||||||||||||||   | ||||||||||||||||||||| ||||||||||    
T  3338827 gtttgtgacgttccatgttttagagtcgggttttaccgtggtgaaaggggccaatggaaacgaacttaggggtgtatgcgtcttcattgtgtttgcgaat 3338728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 35549 - 35775
Alignment:
Q  17 tagggtttcagaataacagcgtttgaaatcagataatatagaatctacgtagcagactaagtcatttaaacatgcctcagttcgttggagaaaagctttg 116  Q
    ||||||||| |||||||| | ||||||||||||||| ||||||| || || || ||  |||    ||||| |||| |  ||||||||||||||| |||||    
T  35549 tagggtttccgaataacaacatttgaaatcagataagatagaatatatgtcgctgatcaagatgcttaaagatgcattggttcgttggagaaaatctttg 35648  T
Q  117 aagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaacgacagtgggggtgtatgcgtcttcattga 216  Q
    |||| ||||||||| ||| |||||||||||| |||||| || ||||| ||||||||||||||||||||||||| | | |||||||||||||||||||||     
T  35649 aagtaaatgagtttgtgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaatggaaacgaaattaggggtgtatgcgtcttcattgt 35748  T
Q  217 gtttgcgaattttagaggggaccttgt 243  Q
    ||||||||||   ||||||||||||||    
T  35749 gtttgcgaataacagaggggaccttgt 35775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 49613092 - 49613037
Alignment:
Q  96 gttcgttggagaaaagctttgaagtgaatgagtttctgaggttccatgttttggag 151  Q
    ||||||||||||||||||||||||| ||||||||| ||  | ||||||||||||||    
T  49613092 gttcgttggagaaaagctttgaagtaaatgagtttgtggcgctccatgttttggag 49613037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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