View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_24 (Length: 374)
Name: NF15178_high_24
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_24 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 44147261 - 44146913
Alignment:
| Q |
10 |
ggtagattatacttgctttagttgtgtatctaattgaaaactaaatcatacaacaagaggaccctgcattatctgaatagtgcatagatttagcgagagt |
109 |
Q |
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| T |
44147261 |
ggtaaattaaacttgctttagttgtgtttctaattgaaaactaaatcatacaacaagaggaccctgcattatcttaatagtgcatagatttagcgagagt |
44147162 |
T |
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| Q |
110 |
caatattcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggtatcatgtaatcttacatcttttaagtatttaatactagct |
209 |
Q |
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| T |
44147161 |
caatattcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggcatcatgtaatcttacatcttttaattatttaatactagct |
44147062 |
T |
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| Q |
210 |
gtgttggattattgttaattggttaattatttctcaatcaatttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttct |
309 |
Q |
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| T |
44147061 |
gtgttggattattgttaattggttaattattcctcaatcaatttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttct |
44146962 |
T |
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| Q |
310 |
gcacgggcttggagctcgaacgcactcagctagcattttctctgccaac |
358 |
Q |
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| T |
44146961 |
gcacgggcttggagctcgaacgcactcagctagcattttctctgccaac |
44146913 |
T |
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Target: scaffold0036 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 116 - 346
Target Start/End: Complemental strand, 7369 - 7148
Alignment:
| Q |
116 |
tcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggtatcatgtaatcttacatcttttaagtatttaatactagctgtgttg |
215 |
Q |
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| T |
7369 |
tcaatagcaacaaatagattcaatt--agta-tacacagataatggaggatggtgttatgtaataccacatctttgaagcatttcatactagctatgttg |
7273 |
T |
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| Q |
216 |
gattattgttaattggttaattatttctcaatcaa-tttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttctgcacg |
314 |
Q |
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| T |
7272 |
aattagtgtt-------taattattcttcaatcaactttccggcttgttgattcattttcttctctgcactaaatttgtggcaggaaaagtttctgcacc |
7180 |
T |
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| Q |
315 |
ggcttggagctcgaacgcactcagctagcatt |
346 |
Q |
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| T |
7179 |
gacttggagcttcaacgtgctgagctagcatt |
7148 |
T |
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