View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15178_high_28 (Length: 354)
Name: NF15178_high_28
Description: NF15178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15178_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 26456869 - 26456543
Alignment:
| Q |
9 |
gacatcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456869 |
gacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttc |
26456770 |
T |
|
| Q |
109 |
aaaacaaaagagtattactcacgagcgaataaatttttccaacagccttttcaaagtattttcaaataacaactttagcatatttacggttccgatgact |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456769 |
aaaacaaaagagtattactcacgagcgaataaatttttctaacagccttttcaaagtattttcaaataacaactttagcatatttacggttccgatgact |
26456670 |
T |
|
| Q |
209 |
ctaagatacactaacaagcgtctggaccagagcagctttaattgctccctataaataactaaaaacaggcaaataaaataacaactaaagttgtcactta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456669 |
ctaagatacactaacaagcgtctggaccagagcagctttaattgctccctagaaataactaaaaacaggcaaataaaataacaactaaagttgtcactta |
26456570 |
T |
|
| Q |
309 |
ttctagcatccctaacagttaagactt |
335 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
26456569 |
ttctagcatccctaacagttaagactt |
26456543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 21530325 - 21530469
Alignment:
| Q |
14 |
catcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttcaaaac |
113 |
Q |
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|||| |||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||| | ||| ||||| ||| ||| ||||||||||| |
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| T |
21530325 |
catctctcacacaagtataaacattcaattcaaaaaa-aaaatattagagaaataaaacataacaaaatcaaaaggtaatattgggttatacttcaaaac |
21530423 |
T |
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| Q |
114 |
aaaa-gagtattactcacgagcgaataaatttttccaacagccttt |
158 |
Q |
| |
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|||| ||||||||| ||| | ||||||||||||| |||| ||||| |
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| T |
21530424 |
aaaatgagtattacacacaaaggaataaatttttctaacaaccttt |
21530469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 21525328 - 21525434
Alignment:
| Q |
17 |
cactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttcaaaacaaa |
116 |
Q |
| |
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||||| ||||||||||||||||||||| ||||| ||| ||| ||| |||||||||||||||| || || |||||| ||| |||| ||||||||||||| |
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| T |
21525328 |
cactcgcacatgtataaaccttcaatt--aaaaaaaaattataagaaaaataaaacataacaaaaccaa--agtaatattgggttgcacttcaaaacaaa |
21525423 |
T |
|
| Q |
117 |
a-gagtattac |
126 |
Q |
| |
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| ||||||||| |
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|
| T |
21525424 |
acgagtattac |
21525434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 21531778 - 21531935
Alignment:
| Q |
1 |
atgagatggacatcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagt |
100 |
Q |
| |
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||||||||| || |||| |||||||| |||||||| ||||||| |||||| | |||| |||||||||||| ||||||| | ||| ||||| ||| || |
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| T |
21531778 |
atgagatgg-cagcatctctcacacaagtataaacattcaattaaaaaaaatatatattagagaaataaaatataacaaaatcaaaaggtaatattgggt |
21531876 |
T |
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| Q |
101 |
tgtacttcaaaacaaaa-gagtattactcacgagcgaataaatttttccaacagccttt |
158 |
Q |
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| T |
21531877 |
tactcttcaaaacaaaatgagtattacacacaaaggaataaatttttccagcaaccttt |
21531935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 21527675 - 21527807
Alignment:
| Q |
14 |
catcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttcaaaac |
113 |
Q |
| |
|
|||||||| |||||||||||| | ||||| |||||| || ||| |||||||||||||||||||| || ||| ||||| ||| ||| |||||||||| |
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| T |
21527675 |
catcactcgcacatgtataaatttgcaattaaaaaaa--aattattagagaaataaaacataacaaaaccaaaaggtaatattggattgcacttcaaaac |
21527772 |
T |
|
| Q |
114 |
aaaa-gagtattactcacgagcgaataaatttttc |
147 |
Q |
| |
|
|||| ||||||||| ||| | |||| |||||||| |
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| T |
21527773 |
aaaatgagtattacacacaaaggaatgaatttttc |
21527807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 11493638 - 11493758
Alignment:
| Q |
9 |
gacatcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttc |
108 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||| |||| | ||||||| |||| |
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| T |
11493638 |
gacagcatcacatacacaggtataaaccttcaattcaaaaacaaaaatattagagaaataaaacatggcaagac-caacactaatatcgagttgtgcttc |
11493736 |
T |
|
| Q |
109 |
aaaacaaaagagtattactcac |
130 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
11493737 |
aaaacaaaagagtaatactcac |
11493758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 29675560 - 29675480
Alignment:
| Q |
9 |
gacatcatcactcacacatgtataaaccttcaattcaaaa----aacaaaatatcagagaaataaaacataacaagactaa |
85 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| |
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| T |
29675560 |
gacagcatcactcacacatgtataaaccttcaattcaaaaaaataaaaatatatcagagaaataaaacataacaagactaa |
29675480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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